OpenFOAM Build Script

build_openfoam.pbs

#!/bin/bash -l
#PBS -S /bin/bash
####### RESOURCES SETUP #######
#These commands set up the Grid Environment for your job:
# -N [Job Name]
# -l nodes=[number of cores]
# -l ncpus=[number of cpus required]
# -l mem=[amount of memory required]
# -l walltime=[how long the job can run for]
# -m ae = mail on (a)bort and (e)rror
# -o $PBS_O_WORKDIR/[stdout file name]
# -e $PBS_O_WORKDIR/[stderr output file name]
 
### Select Resouces
#PBS -N build_foam
#PBS -l nodes=1:ppn=2
#PBS -l mem=2gb
#PBS -l walltime=02:00:00
 
### Output File
#PBS -o stdout.txt
#PBS -e stderr.txt
 
### Queue
#pbs -q workq
 
### Mail Options
#PBS -m abe
#PBS -M user@email.com.add.your.domain
 
# What version of OpenFOAM are we building?
FVER=2.2.2
 
 
 
# If testing in local session, or on PBS
if [ -z "${PBS_O_HOME+xxx}" -o -z "${PBS_O_WORKDIR+xxx}" ]; then
   echo "Running on a local machine (PBS variables not set)"
   export PBS_O_HOME=$HOME
   export PBS_O_WORKDIR=`pwd`
   export WM_NCOMPPROCS=4
else
   export WM_NCOMPPROCS=`nproc`
   echo "load cmake"    && module load cmake
   echo "load gcc    "  && module load gcc
   echo "load mpi"      && module load mpi
   echo "Load openmpi"  && module load openmpi
   echo "load scotch"   && module load scotch
   echo "load paraview" && module load paraview
   echo "Running on PBS"
fi
 
 
echo PBS Home = $PBS_O_HOME
echo PBS Work = $PBS_O_WORKDIR
echo Files are owned by `whoami`
 
####### START PROGRAM #######
SRCDIR=$PBS_O_WORKDIR/tarbells
EXTRAS=$PBS_O_WORKDIR/ThirdParty-$FVER/extras
LOGDIR=$PBS_O_WORKDIR/logs
BUILDDIR=/tmp
mkdir -p $EXTRAS
mkdir -p $LOGDIR
 
function RemoveExisting() {
    # Don't delete the folder, just delete the contents
    #  especially given these folders have chmod 777 and not
    #  the parent.
    rm -rf OpenFOAM-$FVER/*
    rm -rf ThirdParty-$FVER/*
}
 
function ExtractTarbell() {
    # Get tarbell from folder and expand
    cd $PBS_O_WORKDIR
    cp $SRCDIR/OpenFOAM-$FVER.tgz .
    cp $SRCDIR/ThirdParty-$FVER.tgz .
    tar -xzf OpenFOAM-$FVER.tgz
    tar -xzf ThirdParty-$FVER.tgz
    rm OpenFOAM-$FVER.tgz
    rm ThirdParty-$FVER.tgz
}
 
function SetPrefsFile() {
    # Set preferences for compiler
    echo "
foamCompiler=system
export WM_COMPILER=Gcc
export WM_MPLIB=SYSTEMOPENMPI" > $PBS_O_WORKDIR/OpenFOAM-$FVER/etc/prefs.sh

sed -i 's|foamInstall=$HOME/$WM_PROJECT|foamInstall='$PBS_O_WORKDIR'|g' OpenFOAM-$FVER/etc/bashrc && head -n 50 OpenFOAM-$FVER/etc/bashrc

echo "# OpenFOAM bashrc
source $PBS_O_WORKDIR/OpenFOAM-$FVER/etc/bashrc
export PATH=$EXTRAS/bin:\$PATH" > $PBS_O_WORKDIR/OpenFOAM-$FVER-bashrc
}
 
function LoadEnvironment() {
    # Load environment variables and check
    source $PBS_O_WORKDIR/OpenFOAM-$FVER-bashrc
    cd $PBS_O_WORKDIR/OpenFOAM-$FVER
    ./bin/foamSystemCheck
    echo "Sometimes BASH isn't detected, don't worry..."
    cd $PBS_O_WORKDIR
}
 
function BuildOpenFOAM() {
    # Start building OpenFOAM
    cd $PBS_O_WORKDIR/OpenFOAM-$FVER
    ./Allwmake | tee $LOGDIR/log.OpenFOAM
    cd $PBS_O_WORKDIR
}
 
function BuildQT() {
    echo "Building QT"
    cd $PBS_O_WORKDIR/ThirdParty-$FVER
    cp $SRCDIR/qt-everywhere-opensource-src-4.7.3.tar.gz .
    tar -xzf qt-everywhere-opensource-src-4.7.3.tar.gz
    rm qt-everywhere-opensource-src-4.7.3.tar.gz
    ./makeQt | tee $LOGDIR/log.BuildQT
    cd $PBS_O_WORKDIR
}
 
function BuildParaview() {
    cd $PBS_O_WORKDIR/ThirdParty-$FVER
    _qmake=$PBS_O_WORKDIR/ThirdParty-$FVER/build/linux64Gcc/qt-everywhere-opensource-src-4.7.3/bin/qmake
    ./makeParaView -qmake $_qmake | tee $LOGDIR/log.ParaView
 
    # Paraview paraFOAM
    echo "Building paraFOAM"
    cd $FOAM_UTILITIES/postProcessing/graphics/PV3Readers
    ./Allwmake | tee -a $LOGDIR/log.ParaView
 
    cd $PBS_O_WORKDIR
    
}
 
function BuildBison(){
    echo "Building BISON"
    cd $BUILDDIR
    cp $SRCDIR/bison-2.7.tar.gz .
    tar -xzf bison-2.7.tar.gz && rm bison-2.7.tar.gz
    cd bison-2.7
    ./configure --prefix=$EXTRAS | tee $LOGDIR/log.Bison
    make | tee -a $LOGDIR/log.Bison
    make install | tee -a $LOGDIR/log.Bison
    rm -rf $BUILDDIR/bison-2.7
    cd $PBS_O_WORKDIR
}
 
 
function BuildNANO() {
    # Install NANO text editor
    echo "Building NANO"
    cd $BUILDDIR
    cp $SRCDIR/nano-2.2.6.tar.gz .
    tar -xzf nano-2.2.6.tar.gz && rm nano-2.2.6.tar.gz
    cd nano.2.2.6
    ./configure --prefix=$EXTRAS | tee $LOGDIR/log.nano
    make | tee -a $LOGDIR/log.nano
    make install | tee -a $LOGDIR/log.nano
    rm -rf $BUILDDIR/nano-2.2.6
    cd $PBS_O_WORKDIR
}
 
 
function BuildSWAK() {
    # Install Swiss Army Knife
    echo "Building SWAK"
    cp $SRCDIR/swak4Foam.zip .
    unzip swak4Foam.zip -o && rm swak4Foam.zip
    cd swak4Foam
    ./Allwclean | tee $LOGDIR/log.SWAK
    ./Allwmake  | tee -a $LOGDIR/log.SWAK
    cd $PBS_O_WORKDIR
}
 
 
function BuildOSIG() {
    # Install OSIG Turbomachinery
    echo "Building OSIG"
    cp $SRCDIR/OSIG.zip .
    unzip OSIG.zip -o && rm OSIG.zip
 
    cd OSIG/TurboMachinery/src
    ./Allclean | tee $LOGDIR/log.OSIG
    ./Allwmake | tee -a $LOGDIR/log.OSIG
 
    cd ../applications
    ./Allclean | tee -a $LOGDIR/log.OSIG
    ./Allwmake | tee -a $LOGDIR/log.OSIG
}
 
function checkBuildDIR() {
    ls -al /tmp | grep `whoami`
    # Delete things from /tmp that are older than 5 days
    # find /tmp -gid `id -g` -uid `id -u` -type d -ctime +5 -exec rm -r {} \; 2>/dev/null
}
 
 
 
# Build OpenFOAM
#RemoveExisting     # Step 1, Delete the old install of this version (if any)
#ExtractTarbell     # Step 2, Extract the source to the correct directory
SetPrefsFile       # Step 3, Set preferences file
#LoadEnvironment    # Step 4, Load the environment
#BuildOpenFOAM      # Step 5, Build OpenFOAM
 
# Build programs we will always use
#BuildBison         # Step 6, Build BISON 2.7
#BuildNANO          # Step 7, Build Nano text editor
 
# Build Plugins
#BuildQT            # Step 8, Build QT to get qmake
#BuildParaview      # Step 9, Build Paraview to get paraFOAM
 
#BuildSWAK          # Step 10, Build SWAK for extra features
#BuildOSIG          # Step 11, Build OSIG for addSwirlandRotatio