Created
September 28, 2022 06:31
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Import ASAP xml into QuPath
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import qupath.lib.scripting.QP | |
import qupath.lib.geom.Point2 | |
import qupath.lib.roi.PolygonROI | |
import qupath.lib.objects.PathAnnotationObject | |
import qupath.lib.images.servers.ImageServer | |
def server = QP.getCurrentImageData().getServer() | |
def hierarchy = QP.getCurrentHierarchy() | |
def file = new File("C:\\Dataset\\JP2K-33003-1-patch-2217_4809_368_268.xml") | |
//def file = getQuPath().getDialogHelper().promptForFile('xml', null, 'asap xml file', null) | |
def text = file.getText() | |
def doc = new XmlParser().parseText(text) | |
doc.Annotations.Annotation.Coordinates.each { region -> | |
def points = [] | |
region.Coordinate.each{ vertex -> | |
X = vertex.@X.toDouble() | |
Y = vertex.@Y.toDouble() | |
points.add(new Point2(X, Y)) | |
} | |
def roi = new PolygonROI(points) | |
def annotation = new PathAnnotationObject(roi) | |
hierarchy.addPathObject(annotation, false) | |
} | |
QP.fireHierarchyUpdate(hierarchy); |
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