Skip to content

Instantly share code, notes, and snippets.

@SamStudio8

SamStudio8/krakkening.sh

Created September 28, 2018 11:28
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save SamStudio8/710e0ce7b74ca3d05b048d14c791a002 to your computer and use it in GitHub Desktop.
Save SamStudio8/710e0ce7b74ca3d05b048d14c791a002 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
krakkening.sh
PATH=$PATH:/home/ubuntu/ware/blast/ncbi-blast-2.7.1+/bin;
kraken2-build --download-taxonomy --threads 24 --db /working/databases/kraken2-test/
kraken2-build --download-library archaea --db /working/databases/kraken2-test/
kraken2-build --download-library bacteria --db /working/databases/kraken2-test/
kraken2-build --download-library fungi --db /working/databases/kraken2-test/
kraken2-build --download-library protozoa --db /working/databases/kraken2-test/
kraken2-build --download-library viral --db /working/databases/kraken2-test/
kraken2-build --download-library UniVec_Core --db /working/databases/kraken2-test/
kraken2-build --threads 24 --build --db /working/databases/kraken2-test/
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment