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June 22, 2023 05:26
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(partial) EasyBuild log for failed build of /tmp/eb-tm_ztrtr/files_pr18160/m/MaxQuant/MaxQuant-2.4.2.0.eb (PR(s) #18160)
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== 2023-06-22 07:26:24,864 easyblock.py:313 INFO This is EasyBuild 4.7.1 (framework: 4.7.1, easyblocks: 4.7.1) on host ribnode012. | |
== 2023-06-22 07:26:24,864 easyblock.py:319 INFO This is easyblock Tarball from module easybuild.easyblocks.generic.tarball (/mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/lib/python3.8/site-packages/easybuild/easyblocks/generic/tarball.py) | |
== 2023-06-22 07:26:24,865 easyblock.py:1040 INFO Build dir set to /dev/shm/MaxQuant/2.4.2.0/system-system | |
== 2023-06-22 07:26:24,865 config.py:690 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software | |
== 2023-06-22 07:26:24,865 easyconfig.py:2641 DEBUG Determining software installation subdir for MaxQuant EasyConfig @ /tmp/eb-tm_ztrtr/files_pr18160/m/MaxQuant/MaxQuant-2.4.2.0.eb | |
== 2023-06-22 07:26:24,865 easyconfig.py:2644 DEBUG Using fixed naming software installation subdir: MaxQuant/2.4.2.0 | |
== 2023-06-22 07:26:24,865 easyblock.py:1097 INFO Software install dir set to /dev/shm/easybuild/software/MaxQuant/2.4.2.0 | |
== 2023-06-22 07:26:24,865 config.py:690 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /dev/shm/easybuild/modules | |
== 2023-06-22 07:26:24,865 easyblock.py:1102 INFO Module install dir set to /dev/shm/easybuild/modules/all | |
== 2023-06-22 07:26:24,865 easyblock.py:288 INFO Init completed for application name MaxQuant version 2.4.2.0 | |
== 2023-06-22 07:26:24,866 easyblock.py:4175 INFO Obtained application instance of for MaxQuant (easyblock: Tarball) | |
== 2023-06-22 07:26:24,866 easyblock.py:4188 DEBUG Skip set to False | |
== 2023-06-22 07:26:24,866 easyconfig.py:1690 INFO Generating template values... | |
== 2023-06-22 07:26:24,866 templates.py:197 DEBUG config: MaxQuant EasyConfig @ /tmp/eb-tm_ztrtr/files_pr18160/m/MaxQuant/MaxQuant-2.4.2.0.eb | |
== 2023-06-22 07:26:24,866 templates.py:224 DEBUG version found in easyconfig is 2.4.2.0 | |
== 2023-06-22 07:26:24,866 templates.py:326 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2023-06-22 07:26:24,867 templates.py:326 DEBUG name: github_account, config: %(namelower)s | |
== 2023-06-22 07:26:24,867 templates.py:326 DEBUG name: name, config: MaxQuant | |
== 2023-06-22 07:26:24,867 templates.py:326 DEBUG name: parallel, config: None | |
== 2023-06-22 07:26:24,867 templates.py:326 DEBUG name: version, config: 2.4.2.0 | |
== 2023-06-22 07:26:24,867 templates.py:326 DEBUG name: versionsuffix, config: | |
== 2023-06-22 07:26:24,867 templates.py:326 DEBUG name: versionprefix, config: | |
== 2023-06-22 07:26:24,867 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='maxquant', github_account='maxquant', module_name='MaxQuant/2.4.2.0', name='MaxQuant', nameletter='M', nameletterlower='m', namelower='maxquant', toolchain_name='system', toolchain_version='system', version='2.4.2.0', version_major='2', version_major_minor='2.4', version_minor='4', versionprefix='', versionsuffix='' | |
== 2023-06-22 07:26:24,868 one.py:150 DEBUG Not copying '__builtins__' variable from parsed easyconfig | |
== 2023-06-22 07:26:24,869 one.py:529 DEBUG Extracted comments: | |
{'above': {}, | |
'header': [], | |
'inline': {}, | |
'iterabove': {}, | |
'iterinline': {'sanity_check_commands': {' ("dotnet $EBROOTMAXQUANT/bin/%(name)sCmd.exe --version 2>&1 | grep -q 2.4.1.0", \'\'),': ' ' | |
'# ' | |
'reports ' | |
'wrong ' | |
'version'}}, | |
'tail': []} | |
== 2023-06-22 07:26:24,869 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2023-06-22 07:26:24,871 easyconfig.py:1256 DEBUG Dumped easyconfig: easyblock = 'Tarball' | |
name = 'MaxQuant' | |
version = '2.4.2.0' | |
homepage = 'https://maxquant.org/maxquant' | |
description = """MaxQuant is a quantitative proteomics software package designed for analyzing large | |
mass-spectrometric data sets. It is specifically aimed at high-resolution MS data. Several labeling | |
techniques as well as label-free quantification are supported.""" | |
toolchain = {'name': 'system', 'version': 'system'} | |
sources = ['%(name)s_%(version)s.zip'] | |
checksums = ['03d8acc28ff8d71772d72d3da493e508553bd30f52f09c979bb9fcdb090e7799'] | |
dependencies = [ | |
('dotNET-SDK', '3.1.300', '-linux-x64'), | |
] | |
download_instructions = """ | |
To download the %(name)s source tarball, register at: | |
https://www.%(namelower)s.org/download_asset/%(namelower)s/latest | |
You should receive a unique download URL via email. | |
""" | |
modaliases = { | |
'maxquantcmd': "dotnet $EBROOTMAXQUANT/bin/%(name)sCmd.exe", | |
'maxquantgui': "dotnet $EBROOTMAXQUANT/bin/%(name)sGui.exe", | |
} | |
modloadmsg = """ | |
To run %(name)s in command-line mode: maxquantcmd <options> | |
in GUI mode: maxquantgui | |
""" | |
sanity_check_paths = { | |
'files': ['%(name)s.exe', 'bin/%(name)sCmd.exe', 'bin/%(name)sGui.exe'], | |
'dirs': [], | |
} | |
sanity_check_commands = [ | |
('dotnet $EBROOTMAXQUANT/bin/%(name)sCmd.exe --version 2>&1 | grep -q %(version_major_minor)s.1.0', ''), | |
('dotnet $EBROOTMAXQUANT/bin/%(name)sCmd.exe --help 2>&1 | grep -q USAGE', ''), | |
] | |
moduleclass = 'bio' | |
== 2023-06-22 07:26:24,871 filetools.py:1918 INFO Creating directory /tmp/eb-tm_ztrtr/reprod_20230622072624_7158 (parents: True, set_gid: False, sticky: False) | |
== 2023-06-22 07:26:24,871 easyblock.py:4429 INFO Dumped easyconfig instance to /tmp/eb-tm_ztrtr/reprod_20230622072624_7158/MaxQuant-2.4.2.0.eb | |
== 2023-06-22 07:26:24,871 filetools.py:1918 INFO Creating directory /tmp/eb-tm_ztrtr/reprod_20230622072624_7158/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2023-06-22 07:26:24,873 filetools.py:2431 INFO /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/lib/python3.8/site-packages/easybuild/easyblocks/generic/tarball.py copied to /tmp/eb-tm_ztrtr/reprod_20230622072624_7158/easyblocks/tarball.py | |
== 2023-06-22 07:26:24,873 easyblock.py:4409 INFO Dumped easyblock tarball.py required for reproduction to /tmp/eb-tm_ztrtr/reprod_20230622072624_7158/easyblocks | |
== 2023-06-22 07:26:24,873 easyblock.py:2188 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2023-06-22 07:26:24,873 build_log.py:267 INFO building and installing MaxQuant/2.4.2.0... | |
== 2023-06-22 07:26:24,874 config.py:690 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software | |
== 2023-06-22 07:26:24,874 filetools.py:2011 INFO Lock /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock does not exist | |
== 2023-06-22 07:26:24,874 config.py:690 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software | |
== 2023-06-22 07:26:24,874 filetools.py:1952 INFO Creating lock at /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock... | |
== 2023-06-22 07:26:24,874 filetools.py:1918 INFO Creating directory /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock (parents: True, set_gid: False, sticky: False) | |
== 2023-06-22 07:26:24,874 filetools.py:1961 INFO Lock created: /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock | |
== 2023-06-22 07:26:24,875 easyblock.py:3892 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2023-06-22 07:26:24,875 build_log.py:267 INFO fetching files... | |
== 2023-06-22 07:26:24,875 easyblock.py:3901 INFO Starting fetch step | |
== 2023-06-22 07:26:24,875 easyconfig.py:1690 INFO Generating template values... | |
== 2023-06-22 07:26:24,875 templates.py:197 DEBUG config: MaxQuant EasyConfig @ /tmp/eb-tm_ztrtr/files_pr18160/m/MaxQuant/MaxQuant-2.4.2.0.eb | |
== 2023-06-22 07:26:24,875 templates.py:224 DEBUG version found in easyconfig is 2.4.2.0 | |
== 2023-06-22 07:26:24,875 templates.py:326 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2023-06-22 07:26:24,875 templates.py:326 DEBUG name: github_account, config: %(namelower)s | |
== 2023-06-22 07:26:24,876 templates.py:326 DEBUG name: name, config: MaxQuant | |
== 2023-06-22 07:26:24,876 templates.py:326 DEBUG name: parallel, config: None | |
== 2023-06-22 07:26:24,876 templates.py:326 DEBUG name: version, config: 2.4.2.0 | |
== 2023-06-22 07:26:24,876 templates.py:326 DEBUG name: versionsuffix, config: | |
== 2023-06-22 07:26:24,876 templates.py:326 DEBUG name: versionprefix, config: | |
== 2023-06-22 07:26:24,876 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='maxquant', builddir='/dev/shm/MaxQuant/2.4.2.0/system-system', github_account='maxquant', installdir='/dev/shm/easybuild/software/MaxQuant/2.4.2.0', module_name='MaxQuant/2.4.2.0', name='MaxQuant', nameletter='M', nameletterlower='m', namelower='maxquant', start_dir='None', toolchain_name='system', toolchain_version='system', version='2.4.2.0', version_major='2', version_major_minor='2.4', version_minor='4', versionprefix='', versionsuffix='' | |
== 2023-06-22 07:26:24,876 easyblock.py:3909 INFO Running method fetch_step part of step fetch | |
== 2023-06-22 07:26:24,877 easyblock.py:2310 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2023-06-22 07:26:24,877 easyblock.py:802 INFO Considering directory in which easyconfig file is located when searching for MaxQuant_2.4.2.0.zip: /tmp/eb-tm_ztrtr/files_pr18160/m/MaxQuant | |
== 2023-06-22 07:26:24,877 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/bin/eb | |
== 2023-06-22 07:26:24,877 tools.py:287 INFO Also considering installation prefix /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1 (determined via path to 'eb' script)... | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-tm_ztrtr/files_pr18160/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-tm_ztrtr/fake_vsc_unbqgck3/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3/dist-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/lib/python3.8/site-packages/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python38.zip/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.8/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,878 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.8/lib-dynload/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,879 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/itadmin/.local/lib/python3.8/site-packages/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,879 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python3.8/dist-packages/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,879 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3/dist-packages/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,879 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3/dist-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,879 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/easybuild/easyconfigs | |
== 2023-06-22 07:26:24,879 tools.py:306 DEBUG Added /mnt/software/easybuild/20.04/software/EasyBuild/4.7.1/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2023-06-22 07:26:24,889 filetools.py:1937 DEBUG Not creating existing path /dev/shm/easybuild/sources/m/MaxQuant | |
== 2023-06-22 07:26:24,890 easyblock.py:926 DEBUG Trying to download file MaxQuant_2.4.2.0.zip from https://sources.easybuild.io/m/MaxQuant/MaxQuant_2.4.2.0.zip to /dev/shm/easybuild/sources/m/MaxQuant/MaxQuant_2.4.2.0.zip ... | |
== 2023-06-22 07:26:24,890 filetools.py:753 DEBUG Trying to download MaxQuant_2.4.2.0.zip from https://sources.easybuild.io/m/MaxQuant/MaxQuant_2.4.2.0.zip to /dev/shm/easybuild/sources/m/MaxQuant/MaxQuant_2.4.2.0.zip | |
== 2023-06-22 07:26:24,890 filetools.py:760 DEBUG Using timeout of 10 seconds for initiating download | |
== 2023-06-22 07:26:24,890 filetools.py:1937 DEBUG Not creating existing path /dev/shm/easybuild/sources/m/MaxQuant | |
== 2023-06-22 07:26:25,061 filetools.py:837 WARNING URL https://sources.easybuild.io/m/MaxQuant/MaxQuant_2.4.2.0.zip was not found (HTTP response code 404), not trying again | |
== 2023-06-22 07:26:25,062 filetools.py:864 WARNING Download of https://sources.easybuild.io/m/MaxQuant/MaxQuant_2.4.2.0.zip to /dev/shm/easybuild/sources/m/MaxQuant/MaxQuant_2.4.2.0.zip failed, done trying | |
== 2023-06-22 07:26:25,067 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/20.04/software/EasyBuild/4.7.1/lib/python3.8/site-packages/easybuild/base/exceptions.py:126 in __init__): Couldn't find file MaxQuant_2.4.2.0.zip anywhere, please follow the download instructions above, and make the file available in the active source path (/dev/shm/easybuild/sources) (at easybuild/20.04/software/EasyBuild/4.7.1/lib/python3.8/site-packages/easybuild/framework/easyblock.py:962 in obtain_file) | |
== 2023-06-22 07:26:25,069 build_log.py:267 INFO ... (took < 1 sec) | |
== 2023-06-22 07:26:25,069 config.py:690 DEBUG software install path as specified by 'installpath' and 'subdir_software': /dev/shm/easybuild/software | |
== 2023-06-22 07:26:25,069 filetools.py:2019 INFO Removing lock /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock... | |
== 2023-06-22 07:26:25,069 filetools.py:384 INFO Path /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock successfully removed. | |
== 2023-06-22 07:26:25,070 filetools.py:2023 INFO Lock removed: /dev/shm/easybuild/software/.locks/_dev_shm_easybuild_software_MaxQuant_2.4.2.0.lock | |
== 2023-06-22 07:26:25,070 easyblock.py:4232 WARNING build failed (first 300 chars): Couldn't find file MaxQuant_2.4.2.0.zip anywhere, please follow the download instructions above, and make the file available in the active source path (/dev/shm/easybuild/sources) | |
== 2023-06-22 07:26:25,070 easyblock.py:328 INFO Closing log for application name MaxQuant version 2.4.2.0 |
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