Forked from seandavi/Genome_Informatics_2017_software.csv
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December 27, 2017 01:15
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Software list mined from twitter feed for CSHL Genome Informatics meeting, 2017
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| url | name | user | type | |
|---|---|---|---|---|
| https://bioconductor.org/packages/regioneR | regioneR | NA | Bioconductor | |
| https://bioconductor.org/packages/karyoploteR | karyoploteR | NA | Bioconductor | |
| https://bioconductor.org/packages/metavizr | metavizr | NA | Bioconductor | |
| https://bioconductor.org/packages/IsoformSwitchAnalyzeR | IsoformSwitchAnalyzeR | NA | Bioconductor | |
| https://cran.rstudio.com/packages/UpSetR | UpSetR | NA | CRAN | |
| https://github.com/pachterlab/sleuth | sleuth | pachterlab | github | |
| https://github.com/nekrut/lab_site | lab_site | nekrut | github | |
| https://github.com/bernatgel/karyoploter_tutorial | karyoploter_tutorial | bernatgel | github | |
| https://bitbucket.org/biobakery/metaphlan2 | metaphlan2 | biobakery | github | |
| https://github.com/warrenmcg/sleuth-ALR | sleuth-ALR | warrenmcg | github | |
| https://github.com/warrenmcg/absSimSeq | absSimSeq | warrenmcg | github | |
| https://github.com/statgenetics/seqspark | seqspark | statgenetics | github | |
| https://github.com/konradjk/loftee | loftee | konradjk | github | |
| https://github.com/Illumina/strelka | strelka | Illumina | github | |
| https://github.com/seandavi/awesome-single-cell | awesome-single-cell | seandavi | github | |
| https://github.com/samtools/hts-specs | hts-specs | samtools | github | |
| https://github.com/Oshlack/splatter | splatter | Oshlack | github | |
| https://github.com/Oshlack/scRNA-tools | scRNA-tools | Oshlack | github | |
| https://github.com/shujianbu/Phinch | Phinch | shujianbu | github | |
| https://github.com/mcshane/gi2017-vgp-poster | gi2017-vgp-poster | mcshane | github | |
| https://github.com/PitchInteractiveInc/Phinch | Phinch | PitchInteractiveInc | github | |
| https://github.com/mummer4/mummer | mummer | mummer4 | github | |
| https://github.com/ryanlayer/stix | stix | ryanlayer | github | |
| https://github.com/Blosc/c-blosc | c-blosc | Blosc | github | |
| https://github.com/ryanlayer/giggle | giggle | ryanlayer | github | |
| https://github.com/verilylifesciences/genomewarp | genomewarp | verilylifesciences | github | |
| https://github.com/pmelsted/bfgraph | bfgraph | pmelsted | github | |
| https://github.com/bioFAM/slalom | slalom | bioFAM | github | |
| https://github.com/kvittingseerup/IsoformSwitchAnalyzeR | IsoformSwitchAnalyzeR | kvittingseerup | github | |
| https://github.com/jts/nanopolish | nanopolish | jts | github | |
| https://github.com/EBIvariation/vcf-validator | vcf-validator | EBIvariation | github | |
| https://github.com/marbl/canu | canu | marbl | github | |
| https://github.com/adkinsrs/ergatis-pipelines | ergatis-pipelines | adkinsrs | github | |
| https://github.com/dbcls/RefEx | RefEx | dbcls | github | |
| https://github.com/personalis/hgvslib | hgvslib | personalis | github | |
| https://github.com/Ensembl/ensembl-vep | ensembl-vep | Ensembl | github | |
| https://github.com/sdparekh/zUMIs | zUMIs | sdparekh | github | |
| https://github.com/ncbi/dbsnp | dbsnp | ncbi | github | |
| https://github.com/bvieth/powsimR | powsimR | bvieth | github |
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