1つ目がもっともベーシックなもの、2つ目はProgress Dotsを表示させるもの。

beamer_template_citation.tex

\documentclass[11pt, dvipdfmx]{beamer}
\usepackage[utf8]{inputenc}
%\usetheme{Frankfurt}
\usetheme{Darmstadt}
\useoutertheme[subsection=false]{miniframes}
\AtBeginSection[]{\subsection{}}

\setbeamersize{text margin left=11pt,text margin right=11pt}

\beamertemplatenavigationsymbolsempty
%\usenavigationsymbolstemplate{}
%\usepackage{beamerthemeshadow}
%\let\oldfootnotesize\footnotesize
%\renewcommand*{\footnotesize}{\oldfootnotesize\tiny}

%\setbeamertemplate{footline}[frame number]

%数式フォントの設定
\usefonttheme{professionalfonts}

%画像 2 columns用
\usepackage{graphicx}

%箇条書きの設定
\setbeamertemplate{itemize subitem}{\tiny\raise1.5pt\hbox{\donotcoloroutermaths$\blacksquare$}}
\setbeamertemplate{itemize subsubitem}{\tiny\raise1.5pt\hbox{\donotcoloroutermaths$\blacklozenge$}}

%\addtobeamertemplate{navigation symbols}{}{%下の情報を残したままページ番号を入れる
%    \usebeamerfont{footline}%
%    \usebeamercolor[fg]{footline}%
%    \hspace{1em}%
%    \insertframenumber/\inserttotalframenumber
%}

% Citation
\usepackage{silence,lmodern}
\usepackage[style=authoryear,backend=biber]{biblatex}
\addbibresource{ref.bib}
\WarningFilter{biblatex}{Patching footnotes failed}


\usepackage{courier}

\usepackage{xcolor}
\usepackage{listings,jlisting}
\lstset{language=Python,
    basicstyle=\ttfamily\bfseries,
    commentstyle=\color{darkgray}\itshape,
  stringstyle=\color{black},
  showstringspaces=false,
  breaklines = true,
  breakindent=3pt,
  keywordstyle=\color{black}\bfseries}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
\title{Foreign Aid} 
\subtitle{1990-2010} 
\author{}
\date{xxxx/x/x \\ University} 

\frame{\titlepage} 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section{Introduction}

\begin{frame}[fragile]
\frametitle{Does Foreign Aid Promote Democracy?}
\textcite{Goldsmith2001}
\end{frame}


\begin{frame}[allowframebreaks]
\frametitle{References}
\renewcommand*{\bibfont}{\scriptsize}
\printbibliography	
\end{frame}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\appendix % これを入れることで、メインのプログレスバーに反映されない
\begin{frame}[allowframebreaks]
\frametitle{References}
\renewcommand*{\bibfont}{\scriptsize}
\printbibliography	
\end{frame}

\end{document}

beamer_template_default.tex

\documentclass[10pt, dvipdfmx]{beamer}
\usepackage[utf8]{inputenc} % Citationでのエラー防止
\usetheme{Frankfurt}
\setbeamersize{text margin left=11pt,text margin right=11pt}

\usenavigationsymbolstemplate{}
\usepackage{beamerthemeshadow}
\let\oldfootnotesize\footnotesize
\renewcommand*{\footnotesize}{\oldfootnotesize\tiny}

\setbeamertemplate{footline}[frame number]

%数式フォントの設定
\usefonttheme{professionalfonts}

%箇条書きの設定
\setbeamertemplate{itemize subitem}{\tiny\raise1.5pt\hbox{\donotcoloroutermaths$\blacksquare$}}
\setbeamertemplate{itemize subsubitem}{\tiny\raise1.5pt\hbox{\donotcoloroutermaths$\blacklozenge$}}

\usepackage{graphicx}

%\addtobeamertemplate{navigation symbols}{}{%下の情報を残したままページ番号を入れる
%    \usebeamerfont{footline}%
%    \usebeamercolor[fg]{footline}%
%    \hspace{1em}%
%    \insertframenumber/\inserttotalframenumber
%}


\usepackage{courier}

\usepackage{xcolor}
\usepackage{listings,jlisting}
\lstset{language=Python,
    basicstyle=\ttfamily\bfseries,
    commentstyle=\color{darkgray}\itshape,
  stringstyle=\color{black},
  showstringspaces=false,
  breaklines = true,
  breakindent=3pt,
  keywordstyle=\color{black}\bfseries}

\begin{document}
\title{TITLE} 
\subtitle{SUBTITLE} 
\author{NAME}
\date{****/**/**} 

\frame{\titlepage} 

\frame{\frametitle{今日の内容}\tableofcontents} 


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\section{前回の復習}

\begin{frame}[fragile]
\frametitle{基本} 
Python独特の文法が存在する 
\begin{lstlisting}
def test(number): # 関数の宣言
    for i in range(number): # ループ
        print(i)
\end{lstlisting}

\begin{itemize}
\item 必ずインデントする
\item コメントには\texttt{\#}を使う \\ Ex. \texttt{print("Sample")  \# Comment}
\end{itemize}
\end{frame}

\end{document}

beamer_with_Progress.tex

%ProgressBarを上に表示させたい場合のプリアンブル

\documentclass[11pt, dvipdfmx]{beamer}
\usepackage[utf8]{inputenc} % Citationでのエラー防止
\usetheme{Darmstadt}
\useoutertheme[subsection=false]{miniframes} % subsection用のスペースは除く
\AtBeginSection[]{\subsection{}}

\setbeamersize{text margin left=11pt,text margin right=11pt}

%数式フォントの設定
\usefonttheme{professionalfonts}

%箇条書きの設定
\setbeamertemplate{itemize subitem}{\tiny\raise1.5pt\hbox{\donotcoloroutermaths$\blacksquare$}}
\setbeamertemplate{itemize subsubitem}{\tiny\raise1.5pt\hbox{\donotcoloroutermaths$\blacklozenge$}}

\usepackage{graphicx}

\beamertemplatenavigationsymbolsempty

\setbeamertemplate{footline}[frame number]

\usepackage{courier}

\usepackage{xcolor}
\usepackage{listings,jlisting}
\lstset{language=Python,
    basicstyle=\ttfamily\bfseries,
    commentstyle=\color{darkgray}\itshape,
  stringstyle=\color{black},
  showstringspaces=false,
  breaklines = true,
  breakindent=3pt,
  keywordstyle=\color{black}\bfseries}

\begin{document}

Citationで警告が出て煩わしいなら、

% Citation
\usepackage{silence,lmodern}
\usepackage[style=authoryear,backend=biber]{biblatex}
\addbibresource{ref.bib}
\WarningFilter{biblatex}{Patching footnotes failed}