| Copyright 2024, Simon James Goring | |
| Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: | |
| The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. | |
| THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE |
| {"name":["All Taxa"],"taxonid":[0],"taxongroup":["None"],"children":[{"name":["Betula mean pollen-grain diameter"],"taxonid":[30],"taxongroup":["BIM"]},{"name":["Indeterminable"],"taxonid":[312],"taxongroup":["UPA"],"children":[{"name":["Indeterminable undiff."],"taxonid":[905],"taxongroup":["UPA"]},{"name":["Indeterminable (triporate)"],"taxonid":[2963],"taxongroup":["UPA"]},{"name":["Indeterminable (reticulate)"],"taxonid":[19659],"taxongroup":["UPA"]},{"name":["Indeterminable (corroded)"],"taxonid":[34334],"taxongroup":["UPA"]},{"name":["Indeterminable (broken)"],"taxonid":[34946],"taxongroup":["UPA"]},{"name":["Indeterminable (unknown)"],"taxonid":[35429],"taxongroup":["UPA"]},{"name":["Indeterminable (concealed)"],"taxonid":[35430],"taxongroup":["UPA"]},{"name":["Indeterminable (degraded)"],"taxonid":[35431],"taxongroup":["UPA"]},{"name":["Indeterminable (unidentified)"],"taxonid":[35432],"taxongroup":["UPA"]},{"name":["Indeterminable (crumpled)"],"taxonid":[35433],"taxongroup":["UPA"]},{"name":["Indeter |
| keyword | keyword_count | |
|---|---|---|
| r | 947 | |
| python | 356 | |
| rstats | 353 | |
| bioinformatics | 232 | |
| r-package | 217 | |
| machine-learning | 206 | |
| data-science | 174 | |
| data | 111 | |
| data-visualization | 105 |
| # This script generates a stacked-circle plot using data from the | |
| # Neotoma Paleoecology Database and the Native Land Digital dataset | |
| # https://native-land.ca/ | |
| # Code by: Simon J Goring | |
| # I acknowledge my presence as a settler in unceeded territory, and | |
| # undertake this work with humility towards those for whom the effects | |
| # of colonialism are a lived experience. | |
| pacman::p_load_gh("jeromefroe/circlepackeR") | |
| pacman::p_load(jsonlite, sf, geojsonsf, purrr, dplyr, data.tree, treemap) |
This gist is to support an issue on the TonicAI/condenser project.
The config.json is designed to apply to the Neotoma Paleoecology Database, a postgres database (snapshot available here: https://figshare.com/articles/dataset/Neotoma_Database_Snapshot_2021-06-08/14750697)
The issue appears to be that the application hangs at some point in the processing, but it's not clear how to debug the issue.
| @article{Goring2020Some, | |
| publisher = {GitHub}, | |
| title = {Some Github Repo}, | |
| url = {https://github.com/SimonGoring/MadeUpRepo}, | |
| author = {Goring, Simon}, | |
| date = {2020}, | |
| year = {2020}, | |
| } |
This webinar is set up as a "storytelling" session, about how I work through my projects that are intended for publication. In practice this is now how I manage most of my projects that involve some element of data exploration and collaboration. I will be live-coding during the presentation and intend to do so in a way that will allow people to follow along to some degree.
The webinar will be recorded and so people should not feel obligated to code along, or to keep up. If you would like to follow along, or revisit the webinar at a later date, these are the programs and R packages that you will need.
| """ Import libraries and create the connection. If the connection fails check the JSON file. """ | |
| import json | |
| import csv | |
| import re | |
| import psycopg2 | |
| # Set to True if we want to delete the whole database as it runs: | |
| dropall = True |
