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StephenFordham/Character_groups_example.py

Created April 8, 2019 08:00
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Character_groups_example
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Character_groups_example.py
import re
N_glycosylation_pattern = 'N[^P][ST][^P]'
# putting a caret ^ at the start of the group will negate it
# and match any character that is not in that group
Protein_seq = 'YHWKYELIQNNSNEFC'
if re.search(N_glycosylation_pattern, Protein_seq):
print("N-glycosylation site motif found")
else:
print("No motif found")
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