Created
July 30, 2013 15:11
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Updated PKGBUILD for Structure (http://pritch.bsd.uchicago.edu/structure.html)
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# Maintainer: bmpvieira <mail AT bmpvieira DOT com> | |
# Contributor: Stunts <f DOT pinamartins AT gmail DOT com> | |
pkgname=structure | |
pkgver=2.3.4 | |
pkgrel=1 | |
pkgdesc="Program for using multi-locus genotype data to investigate population structure." | |
arch=('i686' 'x86_64') | |
url="http://pritch.bsd.uchicago.edu/structure.html" | |
license=('GPL') | |
depends=('java-environment') | |
source=(http://pritch.bsd.uchicago.edu/structure_software/release_versions/v${pkgver}/structure_kernel_source.tar.gz | |
http://pritch.bsd.uchicago.edu/structure_software/release_versions/v${pkgver}/structure_frontend_source.tar.gz) | |
md5sums=('4e0591678cdbfe79347d272b5dceeda1' | |
'f4b257767562ba732c7a02414fee1865') | |
build() { | |
#build core program | |
cd ${srcdir}/structure_kernel_src | |
make | |
#build frontend | |
cd ${srcdir}/structure_frontend_src | |
javac -cp class/Structure.jar RunStructure.java | |
} | |
package() { | |
#crete necessary dirs | |
mkdir -p "${pkgdir}/usr/bin" | |
mkdir -p ${pkgdir}/opt/structure/bin | |
#copy frontend files | |
cp -r ${srcdir}/structure_frontend_src/{class,images,library} ${pkgdir}/opt/structure/ | |
#copy core program file | |
cp ${srcdir}/structure_kernel_src/structure ${pkgdir}/opt/structure/bin | |
cd "$pkgdir/opt/structure" | |
#create launcher script | |
echo '#!/bin/sh' > structure | |
echo 'cd /opt/structure/' >> structure | |
echo 'java -cp /opt/structure/class/Structure.jar RunStructure' >> structure | |
chmod +x ./structure | |
ln -s "/opt/structure/structure" "$pkgdir/usr/bin/structure" | |
} | |
# vim:set ts=2 sw=2 et: |
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