| Filter | Description |
|---|---|
| alt_allele_in_normal | Evidence seen in the normal sample |
| clustered_events | Clustered events observed in the tumor |
| germline_risk | Evidence indicates this site is germline, not somatic |
| homologous_mapping_event | More than three events were observed in the tumor |
| multi_event_alt_allele_in_normal | Multiple events observed in tumor and normal |
| panel_of_normals | Seen in at least 2 samples in the panel of normals |
| str_contraction | Site filtered due to contraction of short tandem repeat region |
| t_lod_fstar | Tumor does not meet likelihood threshold |
| triallelic_site | Site filtered because more than two alt alleles pass tumor LOD |
Created
February 6, 2019 12:37
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Definition of MuTect2 filters, taken from vcf header.
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