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Tabea-K/get_fastq_seq_lengths.sh

Created August 25, 2015 08:17
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Prints the header line and lengths of sequences in a fastq file in a tab-separated format. Example for output: @seq1 2324 @seq2 1365
Raw
get_fastq_seq_lengths.sh
awk '{if(NR % 4==1){printf $0"\t"}else if(NR % 4==2){print length($0)}}'
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