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June 1, 2016 12:34
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convert fasta to fastq, using a single character for quality ("I"). This is useful for creating dummy files to use for debugging.
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| awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' | awk 'BEGIN {RS = ">" ; FS = "\n"} NR > 1 {print "@"$1"\n"$2"\n+"$1"\n"gensub(/./, "I", "g", $2)}' |
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