gistfile1.txt

ew python executable in /BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/bin/python
install_environment.STDOUT DEBUG 2014-06-10 09:24:24,658 Installing setuptools............done.
Installing setuptools............done.
Installing pip...............done.
Downloading/unpacking requirements.txt (from -r /BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/requirements.txt (line 1))
  Real name of requirement requirements.txt is requirements.txt
  Could not find any downloads that satisfy the requirement requirements.txt (from -r /BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/requirements.txt (line 1))
No distributions at all found for requirements.txt (from -r /BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/requirements.txt (line 1))
Storing complete log in /home/badd-galaxy/.pip/pip.log
Traceback (most recent call last):
  File "/BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/bin/pip", line 8, in <module>
    load_entry_point('pip==1.3.1', 'console_scripts', 'pip')()
  File "/BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/lib/python2.6/site-packages/pip-1.3.1-py2.6.egg/pip/__init__.py", line 149, in main
    return command.main(args[1:], options)
  File "/BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/lib/python2.6/site-packages/pip-1.3.1-py2.6.egg/pip/basecommand.py", line 181, in main
    logger.fatal('Storing complete log in %s' % log_fn)
  File "/BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/lib/python2.6/site-packages/pip-1.3.1-py2.6.egg/pip/log.py", line 48, in fatal
    self.log(self.FATAL, msg, *args, **kw)
  File "/BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/lib/python2.6/site-packages/pip-1.3.1-py2.6.egg/pip/log.py", line 75, in log
    backwardcompat.fwrite(consumer, rendered)
  File "/BADD/Applications/galaxy/tool_dependencies/snptools/1.0.0/phil/snptools/1b6ec80fe8e8/venv/lib/python2.6/site-packages/pip-1.3.1-py2.6.egg/pip/backwardcompat/__init__.py", line 88, in fwrite
    f.write(s)
ValueError: I/O operation on closed file