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Created May 22, 2024 11:05
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #20119
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easybuild_test_report_20119_easybuilders_preasybuild-easyconfigs_20240522-UTC-11-05-51.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#20119

Test result

Build succeeded for 1 out of 2 (2 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS ml_dtypes-0.3.2-gfbf-2023a.eb
  • **FAIL (unhandled exception: not all arguments converted during string formatting)Traceback (most recent call last): File "/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/main.py", line 135, in build_and_install_software (ec_res['success'], app_log, err) = build_and_install_one(ec, init_env) File "/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/framework/easyblock.py", line 4270, in build_and_install_one result = app.run_all_steps(run_test_cases=run_test_cases) File "/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/framework/easyblock.py", line 4149, in run_all_steps self.run_step(step_name, step_methods) File "/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/framework/easyblock.py", line 3984, in run_step step_method(self)() File "/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/framework/easyblock.py", line 2581, in extract_step extra_options=self.cfg['unpack_options'], change_into_dir=False) File "/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/tools/filetools.py", line 464, in extract_file cmd = cmd % fn TypeError: not all arguments converted during string formatting ** jax-0.4.25-gfbf-2023a-CUDA-12.1.1.eb

Time info

  • start: Wed, 22 May 2024 11:04:27 +0000 (UTC)
  • end: Wed, 22 May 2024 11:05:51 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.9.1
  • easybuild-easyblocks version: 4.9.1
  • command line:
eb -dfr -u --from-pr 20119 --cuda-compute-capabilities=8.6,9.0 --parallel=32
  • full configuration (includes defaults):
--accept-eula-for=''
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/eb-build_thoffman'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--configfiles='/tmp/th/jaxtst/etc/XDG/rome/easybuild/config.cfg'
--container-type='singularity'
--containerpath='/tmp/th/jaxtst/REPO/znver2/containers'
--cuda-compute-capabilities='8.6,9.0'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-silence-hook-trigger
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--download-timeout='10'
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--force
--from-pr='20119'
--generate-devel-module
--github-user='thomashoffmann77'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks='/tmp/th/jaxtst/etc/embl_easyblock_dev/*.py,/g/easybuild/embl_easyblocks/*.py'
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/tmp/th/jaxtst/REPO/znver2/'
--job-backend='GC3Pie'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/tmp/th/jaxtst/Projects'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis,structures'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--optarch='march=native'
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/tmp/th/jaxtst/REPO/znver2/packages'
--parallel='32'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/tmp/th/jaxtst/REPO/znver2/'
--repository='FileRepository'
--repositorypath='/g/easybuild/embl_eb_archive'
--robot-paths=''
--robot='/g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/easybuild/easyconfigs'
--show-progress-bar
--silence-deprecation-warnings=''
--sourcepath='/tmp/th/jaxtst/etc/sources/'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 64
  • cpu arch: x86_64
  • cpu arch name: UNKNOWN
  • cpu model: AMD EPYC 7513 32-Core Processor
  • cpu speed: 3681.0
  • cpu vendor: AMD
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugs.almalinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) ;
  • glibc version: 2.28
  • hostname: srv-mahamid-01.embl.de
  • os name: AlmaLinux
  • os type: Linux
  • os version: 8.8
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Jun 22 2023, 07:44:04) ; [GCC 8.5.0 20210514 (Red Hat 8.5.0-18)]
  • system gcc path: /usr/bin/gcc
  • system python path: None
  • total memory: 257264

List of loaded modules

  • EasyBuild/4.9.1

Environment

BASH_ENV = /usr/share/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
BASH_FUNC_module%% = () {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
BASH_FUNC_which%% = () {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
CMAKE_PREFIX_PATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1
COLORTERM = truecolor
DBUS_SESSION_BUS_ADDRESS = unix:abstract=/tmp/dbus-S3gy1aJH5l,guid=40f05df2e9d1898ff39d68b665ae2f4f
DESKTOP_SESSION = gnome
DISPLAY = :12
EASYBUILD_GITHUB_USER = thomashoffmann77
EBDEVELEASYBUILD = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/easybuild/EasyBuild-4.9.1-easybuild-devel
EBROOTEASYBUILD = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1
EBVERSIONEASYBUILD = 4.9.1
EB_INSTALLPYTHON = /usr/bin/python3
EB_SCRIPT_PATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/bin/eb
ENV = /home/thoffman/.kshrc
FANCYLOGGER_IGNORE_MPI4PY = 1
GDK_BACKEND = x11
GDMSESSION = gnome
GEOPROBE_USEGLX = 1
GJS_DEBUG_OUTPUT = stderr
GJS_DEBUG_TOPICS = JS ERROR;JS LOG
GNOME_DESKTOP_SESSION_ID = this-is-deprecated
GNOME_TERMINAL_SCREEN = /org/gnome/Terminal/screen/b2714934_df9e_4b36_b22a_451d216a35cc
GNOME_TERMINAL_SERVICE = :1.70
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /home/thoffman
HOSTNAME = srv-mahamid-01.embl.de
LANG = en_US.UTF-8
LC_CTYPE = en_US.UTF-8
LD_PRELOAD = libdlfaker.so:libvglfaker.so
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_VERSION = 8.7.30
LMOD_sys = Linux
LOADEDMODULES = EasyBuild/4.9.1
LOGNAME = thoffman
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:
MAIL = /var/spool/mail/thoffman
MANPATH = /usr/share/lmod/lmod/share/man:
MODULEPATH = /tmp/th/jaxtst/REPO/rome/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /usr/share/modulefiles
MODULESHOME = /usr/share/lmod/lmod
MYARCH = rome
MYREPOPATH = /tmp/th/jaxtst
OLDPWD = /tmp/th
PATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/thoffman/.local/bin:/home/thoffman/bin:/usr/pub/bin
PROMAGIC_USEGLX = 1
PWD = /tmp/th/jaxtst/Projects
PYTHONOPTIMIZE = 1
PYTHONPATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages
QT_IM_MODULE = ibus
R_LIBS = /struct/cmueller/thoffman/R-packages/
SESSION_MANAGER = local/unix:@/tmp/.ICE-unix/215124,unix/unix:/tmp/.ICE-unix/215124
SHELL = /bin/bash
SHLVL = 5
SSH_AGENT_PID = 215155
SSH_ASKPASS = /usr/libexec/openssh/gnome-ssh-askpass
SSH_AUTH_SOCK = /run/user/22980/keyring/ssh
SSH_CLIENT = 10.11.29.4 59394 22
SSH_CONNECTION = 10.11.29.4 59394 10.11.8.39 22
SSH_TTY = /dev/pts/18
S_COLORS = auto
TERM = xterm-color
TVNC_VGL = 1
USER = thoffman
VBOX_CROGL_FORCE_SUPPORTED = 1
VGL_COMPRESS = 0
VGL_ISACTIVE = 1
VGL_PROBEGLX = 0
VGL_WM = 1
VNCDESKTOP = TurboVNC: srv-mahamid-01.embl.de:12 (thoffman)
VTE_VERSION = 5204
XDG_CONFIG_DIRS = /tmp/th/jaxtst/etc/XDG/rome/
XDG_CONFIG_HOME = /tmp/th/jaxtst/etc/XDG/rome/
XDG_CURRENT_DESKTOP = GNOME
XDG_DATA_DIRS = /home/thoffman/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
XDG_MENU_PREFIX = gnome-
XDG_RUNTIME_DIR = /run/user/22980
XDG_SESSION_DESKTOP = gnome
XDG_SESSION_ID = 397
XDG_SESSION_TYPE = x11
XMODIFIERS = @im=ibus
_ = /usr/bin/python3
_LMFILES_ = /usr/share/modulefiles/EasyBuild/4.9.1.lua
_ModuleTable001_ = 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
_ModuleTable002_ = bGVzL2FsbCIsICIvZXRjL21vZHVsZWZpbGVzIgosICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwgIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXgiCiwgIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsICIvdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIiwKfSwKc3lzdGVtQmFzZU1QQVRIID0gIi9ldGMvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4Oi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZTovdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIiwKfQo=
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_CMAKE_PREFIX_PATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1:1
__LMOD_REF_COUNT_MODULEPATH = /tmp/th/jaxtst/REPO/rome/modules/all:1;/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1
__LMOD_REF_COUNT_PATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/home/thoffman/.local/bin:2;/home/thoffman/bin:2;/usr/pub/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /g/easybuild/x86_64/Rocky/8/rome/software/EasyBuild/4.9.1/lib/python3.6/site-packages:1
arch = UNKOWN
which_declare = declare -f
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