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| GBBCT1.SEQ Genetic Sequence Data Bank | |
| October 15 2020 | |
| NCBI-GenBank Flat File Release 240.0 | |
| Bacterial Sequences (Part 1) | |
| 101593 loci, 185853961 bases, from 101593 reported sequences | |
| LOCUS AB000100 2992 bp DNA linear BCT 15-MAY-2009 | |
| DEFINITION Synechococcus elongatus PCC 7942 genes for intrinsic membrane | |
| protein, malK-like protein, cyanase, complete cds. | |
| ACCESSION AB000100 | |
| VERSION AB000100.1 | |
| KEYWORDS . | |
| SOURCE Synechococcus elongatus PCC 7942 = FACHB-805 | |
| ORGANISM Synechococcus elongatus PCC 7942 = FACHB-805 | |
| Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; | |
| Synechococcus. | |
| REFERENCE 1 | |
| AUTHORS Harano,Y., Suzuki,I., Maeda,S., Kaneko,T., Tabata,S. and Omata,T. | |
| TITLE Identification and nitrogen regulation of the cyanase gene from the | |
| cyanobacteria Synechocystis sp. strain PCC 6803 and Synechococcus | |
| sp. strain PCC 7942 | |
| JOURNAL J. Bacteriol. 179 (18), 5744-5750 (1997) | |
| PUBMED 9294430 | |
| REFERENCE 2 (bases 1 to 2992) | |
| AUTHORS Omata,T. | |
| TITLE Direct Submission | |
| JOURNAL Submitted (26-DEC-1996) Contact:Tatsuo Omata School of Agricultural | |
| Sciences, Nagoya University, Department of Applied Biological | |
| Sciences; Chikusa, Nagoya, Aichi 464-01, Japan | |
| COMMENT Bacteria and source DNA available from SRC AMB. | |
| The annotation was added by the NCBI Prokaryotic Genome Annotation | |
| Pipeline (PGAP). Information about PGAP can be found here: | |
| https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ | |
| ##Genome-Assembly-Data-START## | |
| Assembly Method :: Unicycler v. v0.4.7 | |
| Genome Representation :: Full | |
| Expected Final Version :: Yes | |
| Genome Coverage :: 176.1x | |
| Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION | |
| ##Genome-Assembly-Data-END## | |
| ##Genome-Annotation-Data-START## | |
| Annotation Provider :: NCBI | |
| Annotation Date :: 10/16/2019 14:40:45 | |
| Annotation Pipeline :: NCBI Prokaryotic Genome | |
| Annotation Pipeline (PGAP) | |
| Annotation Method :: Best-placed reference protein | |
| set; GeneMarkS-2+ | |
| Annotation Software revision :: 4.9 | |
| Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; | |
| repeat_region | |
| Genes (total) :: 4,531 | |
| CDSs (total) :: 4,427 | |
| Genes (coding) :: 4,239 | |
| CDSs (with protein) :: 4,239 | |
| Genes (RNA) :: 104 | |
| rRNAs :: 8, 7, 7 (5S, 16S, 23S) | |
| complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) | |
| tRNAs :: 71 | |
| ncRNAs :: 11 | |
| Pseudo Genes (total) :: 188 | |
| CDSs (without protein) :: 188 | |
| Pseudo Genes (ambiguous residues) :: 0 of 188 | |
| Pseudo Genes (frameshifted) :: 89 of 188 | |
| Pseudo Genes (incomplete) :: 108 of 188 | |
| Pseudo Genes (internal stop) :: 27 of 188 | |
| Pseudo Genes (multiple problems) :: 32 of 188 | |
| CRISPR Arrays :: 2 | |
| ##Genome-Annotation-Data-END## | |
| FEATURES Location/Qualifiers | |
| source 1..2992 | |
| /organism="Synechococcus elongatus PCC 7942 = FACHB-805" | |
| /mol_type="genomic DNA" | |
| /strain="PCC 7942" | |
| /db_xref="taxon:1140" | |
| /clone_lib="constructed in pBluescript II KS-" | |
| gene 121..912 | |
| /gene="cynB" | |
| CDS 121..912 | |
| /gene="cynB" | |
| /codon_start=1 | |
| /transl_table=11 | |
| /product="intrinsic membrane protein" | |
| /protein_id="BAA21794.1" | |
| /translation="MVRTPVPLYLRWAVSILSVLAFLAIWQIAAASGFLGKTFPGSLR | |
| TLQDLFGWLSDPFFDNGPNDLGIGWNLLISLRRVAIGYLLATVVAIPLGIAIGMSALA | |
| SSIFSPFVQLLKPVSPLAWLPIGLFLFRDSELTGVFVILISSLWPTLINTAFGVANVN | |
| PDFLKVSQSLGASRWRTILKVILPAALPSIIAGMRISMGIAWLVIVAAEMLLGTGIGY | |
| FIWNEWNNLSLPNIFSAIIIIGIVGILLDQGFRFLENQFSYAGNR" | |
| gene 916..1785 | |
| /gene="cynD" | |
| CDS 916..1785 | |
| /gene="cynD" | |
| /codon_start=1 | |
| /transl_table=11 | |
| /product="malK-like protein" | |
| /protein_id="BAA21795.1" | |
| /translation="MISEAVPAKEETGQAQLLIEQVGKVFTVNSPSLLDRLRQRSPKR | |
| YVALEDVNLTIASNTFVSIIGPSGCGKSTLLNLIAGLDLPTSGQILLDGQRIRSPGPD | |
| RGIVFQNYALMPWMTALENVIFAVETARPNLSKSQAREVAREHLELVGLTKAADRYPG | |
| QISGGMKQRVAIARALSIRPKLLLMDEPFGALDALTRGYLQEEVLRIWEANKLSVVLI | |
| THSIDEALLLSDRIVVMSRGPRATIREVIDLPAVRPRQRSVIEEDERFVKIKLRLEEH | |
| LFNETRAVEEASV" | |
| gene 1 | |
| /gene="cynS" | |
| CDS 1796..2236 | |
| /gene="cynS" | |
| /EC_number="4.2.1.104" | |
| /codon_start=1 | |
| /transl_table=11 | |
| /product="cyanase" | |
| /protein_id="BAA19515.1" | |
| /translation="MTSAITEQLLKAKKAKGITFTELEQLLGRDEVWIASVFYRQSTA | |
| SPEEAEKLLTALGLDLALADELTTPPVKGCLEPVIPTDPLIYRFYEIMQVYGLPLKDV | |
| IQEKFGDGIMSAIDFTLDVDKVEDPKGDRVKVTMCGKFLAYKKW" | |
| ORIGIN | |
| 1 ctgcagccgc cgactgaaat ctatcgggaa gaaaagctcg cttacgacac ctttaacccg | |
| 61 caggatccag tcgcttacct cgcatctcaa aagcagaaat acgggagata aacacaactt | |
| 121 atggtgagaa ctcctgtacc gctttaccta cgttgggcgg tctccatcct cagcgtgctt | |
| 181 gcgttcctag ccatttggca aattgcggca gcttcaggat ttttaggcaa aacttttcct | |
| 241 ggctccctgc gcactttgca ggatttgttt ggatggcttt cagatccctt ctttgataac | |
| 301 ggccccaatg acttagggat tggctggaac ttactgatta gtttgcgtcg cgttgcgatc | |
| 361 ggctacctgc tggcaacagt tgttgcaatt cctttgggga ttgcaatcgg tatgtcggcg | |
| 421 ctagcttcca gtattttttc gccctttgtg caactcctga agccagtttc acctttggcc | |
| 481 tggttgccga ttggtctctt cttattccga gattcggaat tgacgggtgt ttttgtcatc | |
| 541 ctgatttcga gtctgtggcc aacgttgatc aacacagcgt ttggggtggc gaatgtcaat | |
| 601 cctgactttt tgaaggtttc gcaatctttg ggagctagtc gttggcgcac gattctgaag | |
| 661 gtgattctgc ccgcagcatt gcccagcatc atcgcgggaa tgcggatcag catgggcatt | |
| 721 gcttggctgg tcattgtggc agcagagatg ctgttgggaa caggaattgg ctatttcatt | |
| 781 tggaatgagt ggaataacct atcacttcct aatattttct cggccatcat catcattggg | |
| 841 attgttggca ttcttctcga ccaaggcttc cgttttcttg agaaccagtt ttcttacgca | |
| 901 ggcaaccgat aacccatgat ttctgaagct gtgccagcca aggaggagac agggcaggct | |
| 961 caattgctga ttgagcaagt tggcaaagtt tttactgtca attcaccttc tctcctcgat | |
| 1021 cgccttcgac agcgatcgcc caaacgctac gttgcattag aagatgtcaa cctcacgatc | |
| 1081 gcgtcgaaca catttgtctc gattattggc ccttcgggtt gtggtaaatc aacccttctc | |
| 1141 aacttgattg ctggccttga tttaccaacg tctggccaga ttctgctgga tggtcaacgc | |
| 1201 attcgatcgc cggggcccga tcgtggcatc gtcttccaga actatgccct gatgccctgg | |
| 1261 atgaccgcgc ttgagaatgt catctttgca gttgaaacgg cgcgcccaaa cctgagcaaa | |
| 1321 tcccaagctc gcgaagtggc acgagagcat ctagagctgg tgggtttaac caaagctgcc | |
| 1381 gatcgctatc cgggccaaat ttcagggggg atgaaacagc gcgtagcgat cgcccgtgcc | |
| 1441 ctctccatcc gtcctaagct cctgctgatg gatgaaccct ttggtgcctt ggatgccctc | |
| 1501 acccgtggct acctccaaga agaagtgctg cggatttggg aagccaacaa actgagtgtg | |
| 1561 gtgctcatca ctcacagtat tgatgaagca ctgctgcttt ccgatcgcat tgtggtgatg | |
| 1621 tctcgtgggc cacgagccac tattcgagaa gtgattgatt taccagccgt tcgccctcgg | |
| 1681 caacggtctg tgatcgaaga agatgagcgc ttcgtcaaaa tcaaattgcg ccttgaagaa | |
| 1741 catttgttca acgagacgcg tgcagttgaa gaagccagtg tttaggagaa ttccaatgac | |
| 1801 ctcagcgatt actgaacaac ttctgaaagc gaaaaaagca aagggaatta cctttactga | |
| 1861 gcttgagcaa ttacttggac gggatgaagt ctggattgcg agtgtgttct accgtcaatc | |
| 1921 tacggcttcg cctgaagagg cagaaaagct actgactgct ctgggcttag atctggcctt | |
| 1981 ggctgatgag ttgacgactc cgccggtcaa aggttgtttg gaaccggtga ttccaactga | |
| 2041 tccgttgatc tatcgcttct acgaaatcat gcaggtctat ggcttgcccc tcaaggatgt | |
| 2101 tatccaagaa aaatttggcg atggcatcat gagtgcgatt gatttcacct tagatgtcga | |
| 2161 taaggttgaa gatcccaaag gcgatcgcgt taaggtcacg atgtgtggca agttcttggc | |
| 2221 gtacaagaag tggtaaatac tgctagctaa tcaagcttca attcttgatc actggaggag | |
| 2281 agaggtttcc gcttctctcc ttttttgatt ggaattctct cattaactac gataccgctc | |
| 2341 tgcactgaat gacctcgagc tgagtggaag gtagctcgcc gccgatgata atggcgcctc | |
| 2401 tggaagagtt tggctaagct gtggacggcg atcgcggttg tctgtctgtg ctatgccctt | |
| 2461 gatttcggtg acccgactca agcttagaaa tgttctttat ttgccccgct tgcttccctt | |
| 2521 ctcgttgcga tcgacgtggc aggctaaacg agcgcctggc aatctgggcg ttaagctgtt | |
| 2581 gcaggatcgt aacttggctt tttggacctg caccgcttgg acggatgaag gagccatgcg | |
| 2641 tcggttcatg agagcggatg cccacgggca ggccatgacg aaattgatgg attggtgcag | |
| 2701 cgaagcctca gtcgtccatt ggcagcagga tcagccagac ttgcccgact ggcaggaagc | |
| 2761 tcaccgccgc atgatcgcgg aggggcgccc ctccaaagtg aaccatcctt cggctgccca | |
| 2821 ccaagcattt caggtcgatc cgccgcgccg cgcctagctc agtgactgcg gtcgcgctgt | |
| 2881 cttgcatcat tgcttcgctc taccagcccg gatcgctggc acagtccacg gtgatctcac | |
| 2941 ccgaggcggc atcgggaatc gcagtgatac agccgcagac tggctcgcca tc | |
| // | |
| LOCUS AB000106 1343 bp rRNA linear BCT 05-FEB-1999 | |
| DEFINITION Sphingomonas sp. 16S ribosomal RNA. | |
| ACCESSION AB000106 | |
| VERSION AB000106.1 | |
| KEYWORDS 16S rRNA. | |
| SOURCE Sphingomonas sp. | |
| ORGANISM Sphingomonas sp. | |
| Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; | |
| Sphingomonadaceae; Sphingomonas. | |
| REFERENCE 1 (bases 1 to 1343) | |
| AUTHORS Iwabuchi,T. | |
| TITLE Sphingomonas sp. VT1 16s rRNA | |
| JOURNAL Unpublished | |
| REFERENCE 2 (bases 1 to 1343) | |
| AUTHORS Iwabuchi,T. | |
| TITLE Direct Submission | |
| JOURNAL Submitted (25-DEC-1996) Tokuro Iwabuchi, Shiseido Research Center, | |
| Pharmaco Science Laboratories; 1050 Nippa, Kouhoku-ku, Yokohama, | |
| Kanagawa 223, Japan (E-mail:PEH01461@niftyserve.or.jp, | |
| Tel:+81-45-542-1337, Fax:+81-45-545-5931) | |
| FEATURES Location/Qualifiers | |
| source 1..1343 | |
| /organism="Sphingomonas sp." | |
| /mol_type="rRNA" | |
| /strain="VT1" | |
| /db_xref="taxon:28214" | |
| rRNA 1..1343 | |
| /product="16S ribosomal RNA" | |
| mRNA join(<1261..1281,1283..1287,1290..1293, | |
| 1296..>1301) | |
| /locus_tag="PP7435_CHR1-0252" | |
| /label=lol_no_quotes_this_feature_is_not_real | |
| /product="Hypothetical protein" | |
| ORIGIN | |
| 1 ggaatctgcc cttgggttcg gaataacgtc tggaaacgga cgctaatacc ggatgatgac | |
| 61 gtaagtccaa agatttatcg cccagggatg agcccgcgta ggattagcta gttggtgagg | |
| 121 taaaggctca ccaaggcgac gatccttagc tggtctgaga ggatgatcag ccacactggg | |
| 181 actgagacac ggcccagact cctacgggag gcagcagtag ggaatattgg acaatgggcg | |
| 241 aaagcctgat ccagcaatgc cgcgtgagtg atgaaggcct tagggttgta aagctctttt | |
| 301 acccgggatg ataatgacag taccgggaga ataagccccg gctaactccg tgccagcagc | |
| 361 cgcggtaata cggagggggc tagcgttgtt cggaattact gggcgtaaag cgcacgtagg | |
| 421 cggcgattta agtcagaggt gaaagcccgg ggctcaaccc cggaatagcc tttgagactg | |
| 481 gattgcttga atccgggaga ggtgagtgga attccgagtg tagaggtgaa attcgtagat | |
| 541 attcggaaga acaccagtgg cgaaggcgga tcactggacc ggcattgacg ctgaggtgcg | |
| 601 aaagcgtggg gagcaaacag gattagatac cctggtagtc cacgccgtaa acgatgataa | |
| 661 ctagctgctg gggctcatgg agtttcagtg gcgcagctaa cgcattaagt tatccgcctg | |
| 721 gggagtacgg tcgcaagatt aaaactcaaa ggaattgacg ggggcctgca caagcggtgg | |
| 781 agcatgtggt ttaattcgaa gcaacgcgca gaaccttacc aacgtttgac atccctagta | |
| 841 tggttaccag agatggtttc cttcagttcg gctggctagg tgacaggtgc tgcatggctg | |
| 901 tcgtcagctc gtgtcgtgag atgttgggtt aagtcccgca acgagcgcaa ccctcgcctt | |
| 961 tagttgccat cattcagttg ggtactctaa aggaaccgcc ggtgataagc cggaggaagg | |
| 1021 tggggatgac gtcaagtcct catggccctt acgcgttggg ctacacacgt gctacaatgg | |
| 1081 cgactacagt gggcagctat ctcgcgagag tgcgctaatc tccaaaagtc gtctcagttc | |
| 1141 ggatcgttct ctgcaactcg agagcgtgaa ggcggaatcg ctagtaatcg cggatcagca | |
| 1201 tgccgcggtg aatacgtccc caggtcttgt acacaccgcc cgtcacacca tgggagttgg | |
| 1261 tttcacccga aggcgctgcg ctaactcgca agagaggcag gcgaccacgg tgggatcagc | |
| 1321 gactgggtga gtcgtacagg tgc | |
| // |
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