VincentRouvreau

 ****************************** INTRUSIVE_LIST ******************************
40102 simplices - Persistent_cohomology_random_filtrations________10000_2: 0.01s
40102 simplices - Persistence_boundary_matrix_random_filtrations__10000_2: 0.009s
40102 simplices - Persistence_chain_matrix_random_filtrations_____10000_2: 0.12s
40102 simplices - Persistence_chain_matrix_vine_random_filtrations10000_2: 0.118s
40102 simplices - Persistence_RU_matrix_vine_random_filtrations___10000_2: 0.346s
40102 simplices - Persistence_RU_matrix_repr_random_filtrations___10000_2: 0.023s
60508 simplices - Persistent_cohomology_random_filtrations________10000_3: 0.017s
60508 simplices - Persistence_boundary_matrix_random_filtrations__10000_3: 0.017s
60508 simplices - Persistence_chain_matrix_random_filtrations_____10000_3: 0.474s

VincentRouvreau

import numpy as np
import gudhi
import matplotlib.pyplot as plt
from timeit import default_timer as timer
from datetime import timedelta

def randpers(nb_elts):
    a = np.random.random(size=(nb_elts, 2))
    # birth = column 0 | death = column 0 + column 1
    return np.concatenate(((a[:,0]).reshape(nb_elts,1), (a[:,0] + a[:,1]).reshape(nb_elts,1)), axis=1)

VincentRouvreau

# Standard scientific Python imports
import numpy as np

# Standard scikit-learn imports
from sklearn.datasets import fetch_openml
from sklearn.pipeline import Pipeline
from sklearn.model_selection import train_test_split
from sklearn.svm import SVC
from sklearn import metrics

VincentRouvreau

import gudhi as gd
import numpy as np
import timeit
import os

pt = gd.read_points_from_off_file('SO3_50000.off')
np_pt = np.array(pt)
np.save("SO3_50000.npy", np_pt)

print ("SO3_50000.npy size = ", os.path.getsize("SO3_50000.npy"))

VincentRouvreau

FROM fedora:33

# Upgrade distribution
RUN dnf upgrade -y

# Tools necessary for installing and configuring Ubuntu
RUN dnf install -y g++ cmake python3 boost-devel eigen3-devel gmp-devel CGAL-devel python3-devel python3-pip python3-tkinter python3-pybind11 \
  	&& dnf clean all \
  	&& rm -rf /var/cache/yum

VincentRouvreau

/*    Author(s): Vincent Rouvreau
 *
 *    Copyright (C) 2021 Inria - MIT license
 *
 *    Modification(s):
 */

#include <iostream>
#include <cmath>  // for cos, sin

VincentRouvreau

/*    Author(s): Vincent Rouvreau
 *
 *    Copyright (C) 2021 Inria - MIT license
 *
 *    Modification(s):
 */

#include <iostream>

#include <gudhi/Coxeter_triangulation.h>

VincentRouvreau

/*    This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
 *    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
 *    Author(s):       Vincent Rouvreau
 *
 *    Copyright (C) 2020 Inria
 *
 *    Modification(s):
 *      - YYYY/MM Author: Description of the modification
 */

VincentRouvreau

FROM ubuntu:20.04

# Update and upgrade distribution
RUN apt-get update && \
    apt-get upgrade -y

# Tools necessary for installing and configuring Ubuntu
RUN apt-get install -y \
    apt-utils \
    locales \

VincentRouvreau

2020-06-01T14:05:44.7641161Z ##[section]Starting: Request a runner to run this job
2020-06-01T14:05:45.0444881Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-latest'
2020-06-01T14:05:45.0444912Z Can't find any online and idle self-hosted runner in current repository's account/organization that matches the required labels: 'ubuntu-latest'
2020-06-01T14:05:45.0444931Z Found online and idle hosted runner in current repository's account/organization that matches the required labels: 'ubuntu-latest'
2020-06-01T14:05:45.2334678Z ##[section]Finishing: Request a runner to run this job
2020-06-01T14:05:54.7461447Z Current runner version: '2.263.0'
2020-06-01T14:05:54.7487202Z ##[group]Operating System
2020-06-01T14:05:54.7487823Z Ubuntu
2020-06-01T14:05:54.7488053Z 18.04.4
2020-06-01T14:05:54.7488219Z LTS