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Vini2/ClustalOmegaWrapperTest.py

Created September 22, 2017 14:09
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ClustalOmegaWrapperTest.py
# Import Clustal Omega wrapper
from Bio.Align.Applications import ClustalOmegaCommandline
# Define input file
in_file = "/Users/vijinimallawaarachchi/Documents/Python/Acanthaster_planci_Gnomon.fsa"
# Define output file
out_file = "aligned.fasta"
# Get the command for Clustal Omega
clustalomega_cline = ClustalOmegaCommandline(infile=in_file, outfile=out_file, verbose=True, auto=True)
# Print the executable command
print(clustalomega_cline)
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