Vini2

Vini2

import java.util.Random;

/**
 *
 * @author Vijini
 */

//Main class
public class SimpleDemoGA {

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# Read the file and get the DNA string
file = open('sample_dna.txt', 'r')
dna = file.read()

print "DNA Sequence: ", dna

# DNA codon table
protein = {"TTT" : "F", "CTT" : "L", "ATT" : "I", "GTT" : "V",
           "TTC" : "F", "CTC" : "L", "ATC" : "I", "GTC" : "V",
           "TTA" : "L", "CTA" : "L", "ATA" : "I", "GTA" : "V",

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import argparse
import scipy.special
import csv

parser = argparse.ArgumentParser(description="""Evaluate clustering results. This scripts will return the 
                                                precision, recall, F1-score and ARI of the provided clustering result""")

parser.add_argument("--clustered", 
                    required=True, 
                    type=str,

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# Read the file and get the RNA string
file = open('sample_rna.txt', 'r')
rna = file.read()

print "RNA String: ", rna

# RNA codon table
rna_codon = {"UUU" : "F", "CUU" : "L", "AUU" : "I", "GUU" : "V",
           "UUC" : "F", "CUC" : "L", "AUC" : "I", "GUC" : "V",
           "UUA" : "L", "CUA" : "L", "AUA" : "I", "GUA" : "V",