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Last active July 11, 2023 20:07
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How to install seurat-disk in R 4.2.1 under OSC's Rstudio session
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gistfile1.txt
source(file.path(Sys.getenv("LMOD_PKG"), "init/R"))
module("load", "gnu/11.2.0")
old_ld_path1 <- Sys.getenv("LD_LIBRARY_PATH")
Sys.setenv(LD_LIBRARY_PATH = paste(old_ld_path1, "/apps/hdf5/gnu/9.1/openmpi/4.0/1.12.0/lib",sep=":"))
remotes::install_github("mojaveazure/seurat-disk")
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Wang-Cankun commented Apr 6, 2023 •
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How to install seurat-disk in R 4.2.1 under Ohio Supercomputer Center (OSC)'s Rstudio session

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3. If you can load hdf5r in terminal but failed in R studio, run this before loading

dyn.load('/apps/hdf5/gnu/9.1/openmpi/4.0/1.12.0/lib/libhdf5_hl.so.200')
library(hdf5r)

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