Will-Tyler

2025-06-02 16:48:49,571 INFO sniffles.main (18): Running Sniffles2, build 2.4
2025-06-02 16:48:49,572 INFO sniffles.main (18):   Run Mode: combine
2025-06-02 16:48:49,572 INFO sniffles.main (18):   Start on: 2025/06/02 16:48:49
2025-06-02 16:48:49,572 INFO sniffles.main (18):   Working dir: /N/scratch/tylerwi/ONT_000_COGA_DNA150_Dec2023_TE/work/c4/758a4faaf287f467fa27b658d19d29
2025-06-02 16:48:49,572 INFO sniffles.main (18):   Used command: /usr/local/bin/sniffles --minsvlen 100 --combine-low-confidence 0.0 --combine-low-confidence-abs 0 --combine-output-filtered --threads 32 --reference GCA_000001405.15_GRCh38_no_alt_analysis_set.fna --input snfs.tsv --vcf genotypes_unfiltered.vcf
2025-06-02 16:48:49,572 INFO sniffles.main (18): ==============================
2025-06-02 16:48:49,596 INFO sniffles.main (18): Opening for reading: GCA_000001405.15_GRCh38_no_alt_analysis_set.fna
Info: Fasta index for GCA_000001405.15_GRCh38_no_alt_analysis_set.fna not found. Generating with pysam.faidx (this may take a while)
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