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aaronsaunders

# Unix shell

# run if zero exit
cd tmp/a/b/c && tar xvf ~/archive.tar  # untar if dir exists
# run if non-zero exit
cd tmp/a/b/c || mkdir -p tmp/a/b/c
cd tmp/a/b/c || mkdir -p tmp/a/b/c && tar xvf -C tmp/a/b/c ~/archive.tar

which
whereis

aaronsaunders

with() 

within()


round(x, n)                               # rounds x to n decimal places
ceiling(x)                                # vector x of smallest integers > x
floor(x)                                  # vector x of largest interger < x
as.integer(x)                             # truncates real x to integers (compare to round(x, 0)
as.integer(x < cutpoint)                  # vector x of 0 if less than cutpoint, 1 if greater than cutpoint)

aaronsaunders

# ggplot2 implements the idea of a "grammar of graphics". The grammar implemented 
#   by ggplot2 could be summarized as follows:
#
#   plot: coord, scale, facet(?) + layers
#   layer: data mapping stat geom position?
#
# A plot is defined by a coordinate system (coord), one or more scales (scale), an
#   optional faceting specification (facet), and one or more layers (layer). A layer
#   is defined as an R data frame (data), a specification mapping columns of that 
#   frame into aesthetic properties (mapping), a statistical approach to summarize 

brentp

Very Bad Things

Originally, I named this document "very bad things" because it does some stuff that proper folks should not do, like mixing bash and python and leaving filehandles unclosed. It's about a function I wrote to get sh*t done.

I've been doing bioinformatics for about 10 years now. I used to joke with a friend of mine that most of our work was converting between file formats. We don't joke about that anymore.