Tony Bargnesi abargnesi
abargnesi
/ free_invalid_pointer_test.rb
Created
April 25, 2014 13:16
invalid pointer tests in redlander
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| #!/usr/bin/env ruby | |
| require 'redlander' | |
| include Redlander | |
| class Node | |
| def self.finalize_node(rdf_node_ptr) | |
| proc { | |
| # XXX Uncommenting the following line seems to invalidate the "rdf_node_ptr". Then the librdf_free_node call always succeeds without error. | |
| #Redland.librdf_node_get_type(rdf_node_ptr) | |
| Redland.librdf_free_node(rdf_node_ptr) |
abargnesi
/ 0_Gemfile_only_git
Created
July 18, 2014 03:08
'bundler package --all' fails to find git-sourced gem if Bundler.setup is called twice. Fails in '3_terminal_multiple.md' as well as with the '4_example.rb'.
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| source 'https://rubygems.org' | |
| gem 'bel', :git => 'https://github.com/OpenBEL/bel.rb.git' |
abargnesi
/ 0_directories
Created
July 18, 2014 15:15
Using local directories for gem dependency paths.
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| . | |
| ├── directories | |
| ├── Gemfile | |
| ├── Gemfile.dev | |
| ├── Gemfile.dev.lock | |
| ├── Gemfile.lock | |
| ├── libraries | |
| │ └── gemx | |
| │ ├── gemx.gemspec | |
| │ └── lib |
abargnesi
/ redland.rb
Created
July 30, 2014 19:55
Streaming statements, with configurable return values, using the ruby redland-bindings
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| require_relative '../api.rb' | |
| require 'rdf/redland' | |
| require_relative './triple_iterator.rb' | |
| module OpenBEL | |
| class Storage | |
| include OpenBEL::StorageAPI | |
| DEFAULTS = { | |
| storage: 'sqlite', |
abargnesi
/ gem-fetch-dependencies
Last active
August 29, 2015 14:04
— forked from Milly/gem-fetch-dependencies
Works with rubygems on ruby 2.1.2
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| #!/usr/bin/env ruby | |
| require 'rubygems' | |
| require 'rubygems/commands/fetch_command' | |
| class Gem::Commands::FetchCommand | |
| def add_version_option_with_fetch_depends | |
| add_version_option_without_fetch_depends | |
| add_option('-y', '--[no-]dependencies', "Fetch dependent gems") do |value, options| | |
| options[:dependencies] = value |
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| # | |
| # A fatal error has been detected by the Java Runtime Environment: | |
| # | |
| # SIGSEGV (0xb) at pc=0x00007f4a7c7c7e10, pid=19173, tid=139957912000256 | |
| # | |
| # JRE version: Java(TM) SE Runtime Environment (7.0_65-b17) (build 1.7.0_65-b17) | |
| # Java VM: Java HotSpot(TM) 64-Bit Server VM (24.65-b04 mixed mode linux-amd64 compressed oops) | |
| # Problematic frame: | |
| # C [libzmq.so.3+0x26e10] zmq::socket_base_t::process_term(int)+0x80 | |
| # |
abargnesi
/ gist:72be7fcb7009adb82e14
Created
August 6, 2014 18:26
Fail to migrate using sqlite database...SQL compliant ALTER syntax?
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| [tony@starship openbel-webtools (master * u=)]$ rm db/development.sqlite3 | |
| [tony@starship openbel-webtools (master * u=)]$ rm db/test.sqlite3 | |
| [tony@starship openbel-webtools (master * u=)]$ rake db:setup | |
| -- create_table("belfiles", {:force=>true}) | |
| -> 0.0494s | |
| -- initialize_schema_migrations_table() | |
| -> 0.1396s | |
| You have 3 pending migrations: | |
| 20140806032021 CreateGraphs | |
| 20140806032038 CreateNodes |
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| Started GET "/belfiles/new" for 127.0.0.1 at 2014-08-07 13:20:58 -0400 | |
| Processing by BelfilesController#new as HTML | |
| Rendered belfiles/new.html.erb within layouts/application (17.1ms) | |
| Completed 500 Internal Server Error in 78ms | |
| ActionView::Template::Error (couldn't find file 'cytoscape.js/dist/cytoscape.js' | |
| (in /home/tony/work/repos/openbel-webtools/app/assets/javascripts/application.js:16)): | |
| 3: <head> | |
| 4: <title>OpenbelWebtools</title> | |
| 5: <%= stylesheet_link_tag 'application', media: 'all', 'data-turbolinks-track' => true %> |
abargnesi
/ gist:51a534ed7fb13703b423
Created
August 12, 2014 12:54
BrightstarDB build failure on Mono 3.8.1 (from source)
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| XBuild Engine Version 12.0 | |
| Mono, Version 3.8.1.0 | |
| Copyright (C) 2005-2013 Various Mono authors | |
| Build started 8/12/2014 8:52:02 AM. | |
| __________________________________________________ | |
| Project "/home/tony/work/repos/BrightstarDB/src/core/BrightstarDB/BrightstarDB.csproj" (default target(s)): | |
| Target RestorePackages: | |
| Executing: mono --runtime=v4.0.30319 ../.nuget/NuGet.exe install "packages.config" -source "" -RequireConsent -solutionDir "../" | |
| Restoring NuGet packages... |
abargnesi
/ gist:4ba68271dd559d797e19
Created
August 12, 2014 18:44
KAM Visualization style as cytoscape.js style json.
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| [ { | |
| "format_version" : "1.0", | |
| "generated_by" : "cytoscape-3.1.1", | |
| "target_cytoscapejs_version" : "~2.1", | |
| "title" : "Universe", | |
| "style" : [ { | |
| "selector" : "node", | |
| "css" : { | |
| "background-color" : "rgb(0,0,0)", | |
| "height" : 40.0, |
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