Created
April 19, 2024 04:15
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pheatmap: colored row labels text-by-text
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library(pheatmap) | |
library(grid) | |
mid0scale <- function(test, paletteLength=120){ | |
myColor <- colorRampPalette(c("orange", "white", "royalblue"))(paletteLength) | |
myBreaks <- c(seq(min(test), 0, length.out=ceiling(paletteLength/2) + 1), | |
seq(max(test)/paletteLength, max(test), length.out=floor(paletteLength/2))) | |
return(list(color=myColor, breaks=myBreaks)) | |
} | |
set.seed(123) | |
test = matrix(rnorm(200), 20, 10) | |
test[1:10, seq(1, 10, 2)] = test[1:10, seq(1, 10, 2)] + 3 | |
test[11:20, seq(2, 10, 2)] = test[11:20, seq(2, 10, 2)] + 2 | |
test[15:20, seq(2, 10, 2)] = test[15:20, seq(2, 10, 2)] + 4 | |
colnames(test) = paste("Test", 1:10, sep = "") | |
rownames(test) = paste("Name", 1:20, sep = "") | |
ann <- data.frame(even = as.integer(1L:20L %% 2L == 0L)) | |
row.names(ann) <- row.names(test) | |
fcol <- mid0scale(test) | |
p <- pheatmap(test, | |
color=fcol$color, | |
breaks = fcol$breaks, | |
annotation_row = ann) | |
cols = c("steelblue","firebrick") | |
rcols = rep(cols,each=10) | |
p$gtable$grobs[[5]]$gp=gpar(col=rcols) | |
png("heat.png") | |
print(p) | |
dev.off() |
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