Alan Boyle aboyle
sirselim
/ minknow_hirsute_setup.sh
Created
August 31, 2021 08:37
Small bash script to automate MinKNOW and GPU Guppy set up on 21.04 based systems
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| #!/bin/bash | |
| # author: Miles Benton | |
| # created: 31st Aug 2021 | |
| # modified: 31st Aug 2021 | |
| # | |
| # Notes: | |
| # small bash script that automates installing and setting up ONT minknow and GPU | |
| # guppy for live basecalling and GPU processing of nanopore data on Ubuntu 21.04 | |
| # based releases. | |
| # |
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| n <- 200 | |
| m <- 40 | |
| set.seed(1) | |
| x <- runif(n, -1, 1) | |
| library(rafalib) | |
| bigpar(2,2,mar=c(3,3,3,1)) | |
| library(RColorBrewer) | |
| cols <- brewer.pal(11, "Spectral")[as.integer(cut(x, 11))] | |
| plot(x, rep(0,n), ylim=c(-1,1), yaxt="n", xlab="", ylab="", | |
| col=cols, pch=20, main="underlying data") |