abueg

mkdir -p fastk_benchmark/data
mkdir -p fastk_benchmark/tmpfiles
cd fastk_benchmark/data
aws s3 cp --recursive s3://genomeark/species/Micronycteris_microtis/mMicMic1/genomic_data/pacbio_hifi/
# here is the directory for the 3 files if aws is not a viable option for download: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Micronycteris_microtis/mMicMic1/genomic_data/pacbio_hifi/
cd ..
conda create -n fastk 
conda activate fastk
conda install fastk

abueg

1. turn off the Galaxy instance and make sure nothing is trying to read/write to the DB
2. shut down postgresql using pg_ctl

pg_ctl stop -m smart

3. add following parameters to postgresql.conf

test ! -f [path] returns true if [path] does not exist