GitGutter marks below Sublime bookmarks (quite dirty)

git_gutter_bookmarks.diff

--- /home/eldar/.sublime/history/home/eldar/.config/sublime-text-3/Packages/GitGutter/2013-11-08_02.04.05.git_gutter.py
+++ /home/eldar/.config/sublime-text-3/Packages/GitGutter/git_gutter.py
@@ -31,6 +31,8 @@
             # View is not ready yet, try again later.
             sublime.set_timeout(self.run, 1)
             return
+        # TODO get region_names from settings
+        self.protected_lines = self.lines_of_regions(['bookmarks', 'marks'])
         self.clear_all()
         if ViewCollection.untracked(self.view):
             self.bind_files('untracked')
@@ -44,6 +46,13 @@
             self.bind_icons('inserted', inserted)
             self.bind_icons('changed', modified)

+    def lines_of_regions(self, region_names):
+        lines = set()
+        for region_name in region_names:
+            for region in self.view.get_regions(region_name):
+                lines.update(line.begin() for line in self.view.lines(region))
+        return lines
+
     def clear_all(self):
         for region_name in self.region_names:
             self.view.erase_regions('git_gutter_%s' % region_name)
@@ -52,8 +61,9 @@
         regions = []
         for line in lines:
             position = self.view.text_point(line - 1, 0)
-            region = sublime.Region(position, position)
-            regions.append(region)
+            if position not in self.protected_lines:
+                region = sublime.Region(position, position)
+                regions.append(region)
         return regions

     def lines_removed(self, lines):