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seandavi / demultiplexer.py
Created June 29, 2012 03:59
Demultiplex fastq files from illumina based on supplied index
#!/usr/bin/env python
# quick script for demultiplexing reads from illumina fastq files
# Sean Davis <seandavi@gmail.com>
# 2012-06-29
#
import argparse
import Bio.SeqIO as SeqIO
from itertools import izip
import gzip
from string import maketrans