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accopeland/time.blastn.v.human.w38

Created October 29, 2015 16:42
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megablast 4Mrd/hg19
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time.blastn.v.human.w38
/scratch/copeland> time run_blastn APAHO.4M.fa mydb/human -word_size=38
# module load blast+ && blastn -query APAHO.4M.fa -db mydb/human -outfmt 6 -out blastn.APAHO.4M.fa.v.human.out -evalue 1e-6 -num_alignments 10 -num_threads 8 -word_size=38
real 28m14.418s
user 91m21.060s
sys 2m55.572s
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