JGI repos

gistfile1.txt

 # GAA
 120         bitbucket.org:berkeleylab/jgi-gaag.git
 121         # Portal
 122         https://bitbucket.org/berkeleylab/jgi-portal-libraries
 123         https://bitbucket.org/berkeleylab/jgi-genome-portal
 124         # SDM
 125         https://bitbucket.org/htandra/jgi-kbase-es
 126         https://bitbucket.org/berkeleylab/jgi-lapinpy
 127         https://bitbucket.org/berkeleylab/jgi-sdm-ncbi
 128         https://bitbucket.org/berkeleylab/jgi-sdm-pacbio
 129         https://bitbucket.org/berkeleylab/jgi-sdm-kbase
 130         https://bitbucket.org/berkeleylab/jgi-sdm-illumina
 131         https://bitbucket.org/berkeleylab/jgi-sdm-common
 132         https://bitbucket.org/berkeleylab/jgi-jrm
 133         # PMOS
 134         https://bitbucket.org/berkeleylab/jgi_pmos_ariel
 135         https://bitbucket.org/berkeleylab/jgi_pmos_caliban
 136         https://bitbucket.org/berkeleylab/jgi_pmos_uam
 137         https://bitbucket.org/berkeleylab/jgi_pmos_tools
 138         # USA -- https://bitbucket.org/account/user/berkeleylab/projects/JGIUS
 139         https://bitbucket.org/berkeleylab/chip-seq
 140         https://bitbucket.org/berkeleylab/dap-seq
 141         https://bitbucket.org/berkeleylab/drop-seq
 142         https://bitbucket.org/berkeleylab/jgi-bsseq
 143         https://bitbucket.org/berkeleylab/jgi-exome [ forgot the seq, dorks ]
 144         https://bitbucket.org/berkeleylab/long-read-rna [ omg again ]
 145         https://bitbucket.org/berkeleylab/reseq
 146         https://bitbucket.org/berkeleylab/smrna-seq
 147         # JAMO / JAT
 148         https://bitbucket.org/berkeleylab/jgi-jamo
 149         bitbucket.org:berkeleylab/jgi-jat # jat
 150         https://bitbucket.org/berkeleylab/jgi-jat/src/77feb4aeb025050c41a4471db53ed031401f9355/templates
 151         https://foster505@bitbucket.org/berkeleylab/jgi-mga.git # Brian's MG assembly jgi_mga_meta_rqc.py
 152         # RQC
 153         https://bitbucket.org/berkeleylab/jgi-rqc-pipeline/src <- module load jgi-rqc
 154         https://bitbucket.org/berkeleylab/jgi-rqc # rqc (/global/dna/projectdirs/PI/rqc/prod/ )
 155         https://bitbucket.org/berkeleylab/jgi-rqc-autoqc # stephans code rqc autoqc
 156         https://bitbucket.org/berkeleylab/jgi-rqc-autoqc-data # stephans code rqc-autoqc-data
 157         https://bitbucket.org/berkeleylab/jgi-qaqc
 158         https://bitbucket.org/berkeleylab/jgi-gaag
 159         https://bitbucket.org/berkeleylab/jgi-bbtools
 160         # misc
 161         https://bitbucket.org/wandreopoulos/singlecelldb/
 162         https://bitbucket.org/wandreopoulos/jgi-rqc-16s-library/
 163         # deprecated
 164         jigsaw -
 165         https://bitbucket.org/berkeleylab/jgi-auto-qc  # Michael's autoqc code
 166         https://bitbucket.org/berkeleylab/jgi_itagger # itagger
 167         https://accopeland@bitbucket.org/berkeleylab/jgi-rqc-autoqc-data.git # autoqc