blast-2.2.31-threading

x

> time blastn -query tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta -db refseq.archaea/refseq.archaea -outfmt 6 -out blastn.tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta.v.refseq.archaea.out -evalue 1e-6 -num_alignments 10 -num_threads 1

real    0m8.932s
user    0m8.527s
sys     0m0.407s
copeland@gpint110:/scratch/copeland> time blastn -query tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta -db refseq.archaea/refseq.archaea -outfmt 6 -out blastn.tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta.v.refseq.archaea.out -evalue 1e-6 -num_alignments 10 -num_threads 4

real    0m3.380s
user    0m10.243s
sys     0m0.430s
copeland@gpint110:/scratch/copeland> time blastn -query tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta -db refseq.archaea/refseq.archaea -outfmt 6 -out blastn.tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta.v.refseq.archaea.out -evalue 1e-6 -num_alignments 10 -num_threads 8

real    0m2.161s
user    0m10.952s
sys     0m0.449s
copeland@gpint110:/scratch/copeland> time blastn -query tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta -db refseq.archaea/refseq.archaea -outfmt 6 -out blastn.tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta.v.refseq.archaea.out -evalue 1e-6 -num_alignments 10 -num_threads 16

real    0m1.685s
user    0m13.391s
sys     0m0.528s
copeland@gpint110:/scratch/copeland> time blastn -query tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta -db refseq.archaea/refseq.archaea -outfmt 6 -out blastn.tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta.v.refseq.archaea.out -evalue 1e-6 -num_alignments 10 -num_threads 32

real    0m1.441s
user    0m16.383s
sys     0m0.733s
copeland@gpint110:/scratch/copeland> time blastn -query tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta -db refseq.archaea/refseq.archaea -outfmt 6 -out blastn.tadpole.Mru_no0-9.MDA.bbnorm.k75.asm.fasta.v.refseq.archaea.out -evalue 1e-6 -num_alignments 10 -num_threads 1

real    0m9.111s
user    0m8.737s
sys     0m0.377s