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Created November 3, 2015 23:28
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kraken
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> time run_kraken APAHO.1000.fa --fasta-input
kraken --threads 16 --db /scratch/copeland/kraken_db/standard --output kraken.APAHO.1000.out --fasta-input APAHO.1000.fa
1000 sequences (0.15 Mbp) processed in 0.073s (819.6 Kseq/m, 123.77 Mbp/m).
10 sequences classified (1.00%)
990 sequences unclassified (99.00%)
kraken-report --db /scratch/copeland/kraken_db/standard kraken.APAHO.1000.out
kraken-translate --db /scratch/copeland/kraken_db/standard kraken.APAHO.1000.out
kraken-mpa-report --db /scratch/copeland/kraken_db/standard kraken.APAHO.1000.out
real 0m42.860s
user 0m41.722s
sys 0m1.203s
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