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An ImageJ macro to make a dF/F movie from a calcium imaging recording.Works best if file extension is changed to '.ijm' and saved in your ImageJ folder at plugins/Macros/dFoverFmovie.ijm
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Convert a space delimited table on the system clipboard into markdown table, such as when copying tabular results from matlab or a spreadsheet or R command line. Written to use macos shell cmd pbpaste. But should be reworked to use xclip or similar as an option for linux. This script is most enjoyable when combined with a os wide shortcut, such …
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Brief command shell tutorial. Contains a few unix tips and tricks for working with and examining data files for science. A couple of the examples assume that the working environment is Mac OS X (e.g. pbcopy).
An ImageJ macro to make a dF/F movie from a calcium imaging recording. Works best if file extension is changed to '.ijm' and saved in your ImageJ application folder at plugins/Macros/dFoFmovie-CatFullAutoSave.ijm
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custom css mashup from jekyll base sass v3.1.6 and bootstrap-sass v3.3.6 for ackmanlab jekyll site
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cmake config and output for successful compiling of opencv 3.1.0 on AWS ubuntu server 14.04 with anaconda python3.5 and GTK+2.x/highgui support
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Instructions on converting a multimarkdown manuscript with mmd bibtex cite-keys and graphics into a Microsoft Word document with BibDesk cite-keys and graphics.
Convert multimarkdown manuscript to Microsoft Word document
Here are directions for converting a markdown/multimarkdown formatted text manuscript into a Microsoft Word document (unfortunately still a preferred format for submission to many journals). These directions will focus on turning bibtex citekeys (if you are using BibDesk or similar for references and bibliography management) from the [#citekey] format in multimarkdown to the \cite{citekey} format for use with BibDesk.app and BibDeskToWord.app to
This will use the Multimarkdown command line tool (mmd2odf) to create a flat open office document .fodt text file. Multimarkdown must be installed on your system. Alternatively pandoc can be used for this, but pandoc doesn't handle the nice multimarkdown table format as well and graphics can be messed up in resulting open office document .odt file.
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