shaliu fu adamtongji

## ensembl_vep_86_with_offline_cache.md

      
        
          
            
              
              1 file
            
          
          
            
              
              0 forks
            
          
          
            
              
              0 comments
            
          
          
            
              
              0 stars
            
          
        
        
          
              
          
          
            
                adamtongji
                / ensembl_vep_86_with_offline_cache.md
            
            
              Created
              May 8, 2018 05:48
                — forked from ckandoth/ensembl_vep_86_with_offline_cache.md
            
              
                Install Ensembl's VEP v86 with various caches for running offline
              
          
        
      
        
  
      
    Ensembl's VEP (Variant Effect Predictor) is popular for how it picks a single effect per gene as detailed here, its CLIA-compliant HGVS variant format, and Sequence Ontology nomenclature for variant effects.
To follow these instructions, we'll assume you have these packaged essentials installed:
## For Debian/Ubuntu system admins ##
sudo apt-get install -y build-essential git libncurses-dev

## For RHEL/CentOS system admins ##
sudo yum groupinstall -y 'Development Tools'
sudo yum install -y git ncurses-devel