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adefelicibus/split-vcf-by-sample.sh

Created January 31, 2017 18:29
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Split a vcf file by samples
Raw
split-vcf-by-sample.sh
for file in *.vcf*; do
for sample in `bcftools view -h $file | grep "^#CHROM" | cut -f10-`; do
bcftools view -c1 -Oz -s $sample -o ${file/.vcf*/.$sample.vcf.gz} $file
done
done
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