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adelavega/clean_forrest_stim.py

Created July 24, 2017 21:59
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Fix stim_files in studyorrest
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clean_forrest_stim.py
from bids.grabbids import BIDSLayout
import pandas as pd
import os.path as op
layout = BIDSLayout('../')
event_files = layout.get(task='objectcategories', type='events', return_type='file')
for f in event_files:
events = pd.read_csv(f, delimiter='\t')
events['stim_file'] = events.stim_file.str.replace('stimuli/', '')
events.to_csv(f, sep='\t')
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