Session info for an issue

session_info_derfinder_10092019.R

sessionInfo()                                                                   R version 3.5.1 (2018-07-02) 
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 9 (stretch)

Matrix products: default
BLAS: /fsimb/common/tools/R/3.5.1/lib/R/lib/libRblas.so
LAPACK: /fsimb/common/tools/R/3.5.1/lib/R/lib/libRlapack.so
                                                                                                                                                                                         
locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C                                                                                                                                             
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8                                                                                                                                   
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8                                                                                                                                  
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                                                                                                                                                
 [9] LC_ADDRESS=C               LC_TELEPHONE=C                                                                                                                                           
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C                                                                                                                                      
                                                                                                                                                                                         
attached base packages:
 [1] grid      stats4    parallel  stats     graphics  grDevices utils
 [8] datasets  methods   base
                                                                                                                                                                                         
other attached packages:
 [1] makeitprettier_0.1     ggthemes_4.2.0         scales_1.0.0
 [4] ggplot2_3.2.1          ChIPseeker_1.18.0      rtracklayer_1.42.2
 [7] GenomicFeatures_1.34.8 AnnotationDbi_1.44.0   Biobase_2.42.0
[10] GenomicRanges_1.34.0   GenomeInfoDb_1.18.2    IRanges_2.16.0
[13] S4Vectors_0.20.1       BiocGenerics_0.28.0    data.table_1.12.2
[16] magrittr_1.5
                                                                                                                                                                                         
loaded via a namespace (and not attached):
 [1] bitops_1.0-6
 [2] matrixStats_0.54.0
 [3] enrichplot_1.2.0
 [4] bit64_0.9-7
 [5] RColorBrewer_1.1-2
 [6] progress_1.2.0
 [7] httr_1.4.1
 [8] UpSetR_1.3.3
 [9] tools_3.5.1
[10] R6_2.4.0
[11] KernSmooth_2.23-15
[12] DBI_1.0.0
[13] lazyeval_0.2.2
[14] colorspace_1.4-1
[15] withr_2.1.2
[16] tidyselect_0.2.5
[17] gridExtra_2.3
[18] prettyunits_1.0.2
[19] bit_1.1-14
[20] compiler_3.5.1
[21] xml2_1.2.0
[22] DelayedArray_0.8.0
[23] triebeard_0.3.0
[24] caTools_1.17.1.2
[25] ggridges_0.5.1
[26] stringr_1.4.0
[27] digest_0.6.20
[28] Rsamtools_1.34.1
[29] DOSE_3.8.2
[30] XVector_0.22.0
[31] pkgconfig_2.0.2
[32] plotrix_3.7-6
[33] rlang_0.4.0
[34] RSQLite_2.1.1
[35] gridGraphics_0.3-0
[36] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[37] farver_1.1.0
[38] jsonlite_1.6
[39] gtools_3.8.1
[40] BiocParallel_1.16.6
[41] GOSemSim_2.8.0
[42] dplyr_0.8.3
[43] RCurl_1.95-4.12
[44] ggplotify_0.0.4
[45] GO.db_3.7.0
[46] GenomeInfoDbData_1.2.0
[47] Matrix_1.2-17
[48] Rcpp_1.0.2
[49] munsell_0.5.0
[50] viridis_0.5.1
[51] stringi_1.4.3
[52] ggraph_1.0.2
[53] MASS_7.3-51.3
[54] SummarizedExperiment_1.12.0
[55] zlibbioc_1.28.0
[56] gplots_3.0.1.1
[57] plyr_1.8.4
[58] qvalue_2.14.1
[59] blob_1.1.1
[60] gdata_2.18.0
[61] ggrepel_0.8.0
[62] DO.db_2.9
[63] crayon_1.3.4
[64] fortunes_1.5-4
[65] lattice_0.20-38
[66] Biostrings_2.50.2
[67] cowplot_0.9.4
[68] splines_3.5.1
[69] hms_0.4.2
[70] pillar_1.4.2
[71] fgsea_1.8.0
[72] igraph_1.2.4
[73] boot_1.3-20
[74] reshape2_1.4.3
[75] biomaRt_2.38.0
[76] fastmatch_1.1-0
[77] XML_3.98-1.20
[78] glue_1.3.1
[79] tweenr_1.0.1
[80] urltools_1.7.3
[81] gtable_0.3.0
[82] purrr_0.3.2
[83] polyclip_1.10-0
[84] assertthat_0.2.1
[85] gridBase_0.4-7
[86] ggforce_0.2.1
[87] europepmc_0.3
[88] viridisLite_0.3.0
[89] tibble_2.1.3
[90] rvcheck_0.1.3
[91] GenomicAlignments_1.18.1
[92] memoise_1.1.0