natelandau

#  ---------------------------------------------------------------------------
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#  Description:  This file holds all my BASH configurations and aliases
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#  Sections:
#  1.   Environment Configuration
#  2.   Make Terminal Better (remapping defaults and adding functionality)
#  3.   File and Folder Management
#  4.   Searching
#  5.   Process Management

ce-carey

PRS Scoring of the UK Biobank Using Hail

The run_prs.py script slack_utils.py was created to generate polygenic risk scores (PRS) in the UK Biobank (UKB) using Hail 0.2. Currently, I have hard-coded the file locations in-line with my own file structure and that of the Neale Lab UKB Round 2 GWAS.

NOTE: This is under active development and generally intended for my own use and the use of my collaborators. ADAPT AT YOUR OWN PERIL!!

How to Run

0. This script assumes that you have generated an input file using my process-sumstats and LDPred repos.