aebrahim

#!/usr/bin/env python
"""Script to get firebase bearer token.

This requires the GOOGLE_APPLICATION_CREDENTIALS environmental variable to be
set to a valid service account credential. This is usually done by the
`gcloud auth activate-service-account` command with a JSON key file. This
account will need the iam.serviceAccounts.signBlob permission, which can be
granted by the Service Account Token Creator role.

SPDX-License-Identifier: Apache-2.0

aebrahim

#!/usr/bin/env python3
# SPDX-License-Identifier: Apache-2.0


import base64
import urllib.request
import json

# Documentation of OpenMRS API here:
# https://wiki.openmrs.org/display/docs/REST+Web+Services+API+For+Clients

aebrahim

# A systemd service to register with a dyndns Google domain.
# SPDX-License-Identifier: Apache-2.0

# Too cheap to pay for a constant static IP for your ephemeral working box?
# This service interacts with the Google Domains dynamic DNS API to register
# on boot.
#
# Setup instrucionts
# 1. See https://support.google.com/domains/answer/6147083 to setup Google
#    domain for dyndns and obtain the username and password. Note that these

aebrahim

from lxml.etree import parse, Element, SubElement, \
    ElementTree, register_namespace, ParseError, XPath, \
    XMLParser

from cobra.io.sbml3 import namespaces, strnum, ns


def add_in_flux_bounds(filename, outfile=None, min_value=-1000,
                       max_value=1000):
    if outfile is None or outfile == "":

aebrahim

import os
import wx
import time
import ctypes
import matplotlib
matplotlib.use('WXAgg')
from matplotlib.figure import Figure
from matplotlib.backends.backend_wx import _load_bitmap
from matplotlib.backends.backend_wxagg import \
    FigureCanvasWxAgg as FigCanvas, \

aebrahim

make scipoptlib SHARED=true ZLIB=false READLINE=false GMP=false VERBOSE=true
# now run ar cs with the obj files in the previous command
ar d lib/libscipopt.a  libscipopt-3.2.0.linux.x86_64.gnu.opt.so
# need to make sure linking occurs with g++ to use this

aebrahim

First, checkout the 1.6 code.

Copy the spxdefines.h over to src

make SHARED=true GMP=true ZLIB=false VERBOSE=true
ar crs libsoplex.a obj/*/lib/*

Then in soplex16_mods (will need to adjust paths)

g++ -Wno-main -shared -Wl,-soname,soplex_1.6_lib.so -DWITH_LONG_DOUBLE -o soplex_1.6_lib.so -fPIC  soplexmain_python_callable_basis_read_write.cpp -lsoplex -L/home/aebrahim/soplex -I/home/aebrahim/soplex/src

aebrahim

aebrahim

aebrahim

export CBC_SOURCE_DIR=$HOME/build/Cbc-2.9.5
export CYLP_SOURCE_DIR=$HOME/CyLP

export COIN_INSTALL_DIR=$CBC_SOURCE_DIR/COIN_INSTALL

# first build cbc
cd $CBC_SOURCE_DIR
./configure --enable-static --with-gnu-ld --with-pic --prefix=$COIN_INSTALL_DIR
make install