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@afgane afgane/Galaxy CVMFS
Created May 20, 2019

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Directory layout of the Galaxy CVMFS: data.galaxyproject.org
|-- byhand
| |-- AaegL1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- AgamP3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- Arabidopsis_thaliana_TAIR10
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | | `-- cs
| | |-- chrom
| | |-- download
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- Arabidopsis_thaliana_TAIR9
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- Araly1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- Bombyx_mori_p50T_2.0
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- CpipJ1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- Homo_sapiens_AK1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | | `-- 20110329
| | | |-- 1043
| | | `-- 1156
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index -> picard_index
| |-- Homo_sapiens_nuHg19_mtrCRS
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | | `-- 20110608
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- Hydra_JCVI
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- IscaW1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- PhumU1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- Ptrichocarpa_156
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | | `-- cs
| | | `-- cs
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- Saccharomyces_cerevisiae_S288C_SGD2010
| | `-- seq
| |-- Schizosaccharomyces_pombe_1.1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- Spur_v2.6
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- Sscrofa9.58
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- Tcacao_1.0
| | |-- bowtie_index
| | |-- bwa_index
| | |-- sam_index
| | `-- seq
| |-- Tcas_3.0
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- Zea_mays_B73_RefGen_v2
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- ailMel1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- anoCar1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | | `-- tmp
| | |-- sam_index
| | `-- seq
| |-- anoCar2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- anoGam1
| | |-- align
| | | |-- dm1
| | | `-- dm2
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- apiMel1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- apiMel2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- apiMel3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- aplCal1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- blastdb
| | |-- htgs
| | | `-- 13apr2014
| | |-- log
| | |-- nt
| | | `-- 17apr2014
| | |-- phiX
| | | `-- 27aug2010
| | |-- test
| | | `-- 20140425_snapshot
| | | |-- htgs
| | | |-- nt
| | | `-- wgs
| | `-- wgs
| | `-- 20apr2014
| |-- borEut13
| | |-- align
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- bosTau1
| | `-- seq
| |-- bosTau2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- bosTau3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- bosTau4
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- bosTau5
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- bosTau6
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- bosTau7
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- bosTauMd3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- braFlo1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeJap1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeJap2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeJap3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeJap4
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caePb1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caePb2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caePb3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeRem1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeRem2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeRem3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- caeRem4
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- calJac1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- calJac3
| | |-- align
| | |-- calJac3canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- calJac3full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- canFam1
| | |-- align
| | | |-- hg17
| | | | `-- maf
| | | `-- mm6
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- canFam2
| | |-- align
| | | |-- canFam2
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm6
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- rn3
| | | | `-- maf
| | | `-- rn4
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- canFam3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- cavPor2
| | `-- seq
| |-- cavPor3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- cb3
| | |-- cb3canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- cb3full
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- liftOver
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- ce10
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ce2
| | |-- align
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- ce3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- chrom
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ce4
| | |-- align
| | | |-- caePb1
| | | |-- caeRem2
| | | |-- cb3
| | | `-- priPac1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- chroms
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- ce5
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ce6
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ce7
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ce8
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ce9
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- choHof1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- chrPic1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- ci2
| | |-- ci2canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- ci2full
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- danRer1
| | `-- chrom
| |-- danRer2
| | |-- align
| | | |-- fr1
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- mm6
| | | | `-- maf
| | | `-- tetNig1
| | | `-- maf
| | |-- chrom
| | |-- liftOver
| | |-- nib
| | |-- seq
| | `-- tmp
| | |-- chain
| | `-- net
| |-- danRer3
| | |-- align
| | | |-- fr1
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | `-- tetNig1
| | | `-- maf
| | |-- chrom
| | |-- liftOver
| | |-- nib
| | `-- seq
| |-- danRer4
| | |-- align
| | | |-- fr1
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- rn4
| | | | `-- maf
| | | `-- tetNig1
| | | `-- maf
| | |-- liftOver
| | |-- nib
| | `-- seq
| |-- danRer5
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- perm_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- danRer6
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- perm_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- danRer7
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | | `-- cs
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- dasNov1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- dipOrd1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- dm2
| | |-- align
| | | |-- anoGam1
| | | | `-- maf
| | | |-- apiMel1
| | | |-- apiMel2
| | | |-- dp2
| | | |-- dp3
| | | | `-- maf
| | | |-- droAna1
| | | |-- droMoj1
| | | |-- droPer1
| | | |-- droSec1
| | | |-- droSim1
| | | | `-- maf
| | | |-- droVir1
| | | |-- droYak1
| | | | `-- maf
| | | `-- multiz15way
| | |-- liftOver
| | |-- nib
| | |-- seq
| | `-- tmp
| |-- dm3
| | |-- align
| | | |-- anoGam1
| | | | `-- maf
| | | |-- apiMel3
| | | |-- dp3
| | | | `-- maf
| | | |-- dp4
| | | |-- droAna2
| | | |-- droAna3
| | | |-- droEre1
| | | |-- droEre2
| | | |-- droGri2
| | | |-- droMoj3
| | | |-- droPer1
| | | |-- droSec1
| | | |-- droSim1
| | | | `-- maf
| | | |-- droVir3
| | | |-- droWil1
| | | |-- droYak2
| | | |-- multiz15way
| | | | |-- alignments
| | | | `-- maf
| | | `-- triCas2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- dm4
| |-- dp3
| | |-- align
| | | `-- dm2
| | | `-- maf
| | |-- liftOver
| | |-- nib
| | |-- seq
| | `-- tmp
| |-- dp4
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftover
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droAna1
| | |-- liftOver
| | `-- seq
| |-- droAna2
| | |-- liftOver
| | `-- seq
| |-- droAna3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droEre1
| | |-- align
| | |-- liftOver
| | `-- seq
| |-- droEre2
| | |-- align
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droGri1
| | |-- align
| | |-- liftOver
| | `-- seq
| |-- droGri2
| | |-- align
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droMoj1
| | |-- align
| | |-- liftOver
| | |-- seq
| | `-- tmp
| |-- droMoj2
| | |-- align
| | |-- liftOver
| | `-- seq
| |-- droMoj3
| | |-- align
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droPer1
| | |-- align
| | |-- bowtie2_index
| | |-- bowtie_index
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droSec1
| | |-- align
| | | |-- dm2
| | | | `-- maf
| | | `-- dm3
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droSim1
| | |-- align
| | | `-- dm2
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | |-- bwa_index
| | |-- download
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- droVir1
| | |-- align
| | |-- liftOver
| | |-- seq
| | `-- tmp
| |-- droVir2
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- droVir3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- droWil1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- droYak1
| | |-- align
| | |-- liftOver
| | |-- seq
| | `-- tmp
| |-- droYak2
| | |-- bowtie2_index
| | |-- bowtie_index
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- echTel1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- equCab1
| | |-- align
| | | |-- canFam2
| | | | `-- maf
| | | |-- galGal3
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- mm9
| | | | `-- maf
| | | |-- panTro2
| | | | `-- maf
| | | `-- rn4
| | | `-- maf
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | |-- srma_index
| | `-- tmp
| |-- equCab2
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | | `-- cs
| | |-- liftOver
| | |-- nib
| | |-- perm_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | |-- srma_index
| | `-- tmp
| |-- equCab2_chrM
| | |-- bowtie_index
| | | `-- cs
| | |-- perm_index
| | `-- sam_index
| |-- eriEur1
| | |-- align
| | |-- liftOver
| | `-- quality_scores
| |-- felCat3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- felCat4
| | |-- felCat4canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- felCat4full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- felCat5
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- fr1
| | |-- align
| | | |-- danRer2
| | | | `-- maf
| | | |-- danRer3
| | | | `-- maf
| | | |-- danRer4
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm6
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | `-- mm8
| | | `-- maf
| | |-- liftOver
| | |-- seq
| | `-- tmp
| | |-- chain
| | `-- net
| |-- fr2
| | |-- align
| | |-- liftOver
| | |-- nib
| | |-- seq
| | `-- tmp
| |-- fr3
| | |-- align
| | | `-- gasAcu1
| | | `-- HE
| | |-- liftOver
| | |-- nib
| | `-- seq
| |-- galGal2
| | |-- align
| | | |-- danRer2
| | | | `-- maf
| | | |-- hg16
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | | `-- broken_indices
| | | |-- mm6
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- monDom1
| | | |-- rn4
| | | | `-- maf
| | | |-- tetNig1
| | | | `-- maf
| | | `-- xenTro1
| | |-- galGal2canon
| | |-- galGal2full
| | |-- liftOver
| | |-- nib
| | `-- seq
| |-- galGal3
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- galGal3canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- galGal3full
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- galGal4
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- gasAcu1
| | |-- align
| | | `-- fr3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- geoFor1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- gorGor3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- hetGla1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- hetGla2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- hg16
| | |-- align
| | | |-- encode
| | | | `-- june2005freeze
| | | | `-- tba
| | | |-- mm3
| | | |-- mm4
| | | |-- mm6
| | | | `-- maf
| | | |-- panTro1
| | | | `-- maf
| | | `-- rn3
| | | `-- maf
| | |-- liftOver
| | |-- seq
| | `-- tmp
| |-- hg17
| | |-- align
| | | |-- 8way-multiZ
| | | |-- bosTau1
| | | | `-- maf
| | | |-- bosTau2
| | | | `-- maf
| | | |-- canFam1
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer1
| | | |-- danRer2
| | | | `-- maf
| | | |-- danRer3
| | | | |-- maf
| | | | `-- old
| | | |-- encode
| | | | `-- september2005_relabeled
| | | | |-- mavid
| | | | | |-- abs
| | | | | `-- rel
| | | | |-- mlagan
| | | | | |-- ENm001
| | | | | |-- ENm002
| | | | | |-- ENm003
| | | | | |-- ENm004
| | | | | |-- ENm005
| | | | | |-- ENm006
| | | | | |-- ENm007
| | | | | |-- ENm008
| | | | | |-- ENm009
| | | | | |-- ENm010
| | | | | |-- ENm011
| | | | | |-- ENm012
| | | | | |-- ENm013
| | | | | |-- ENm014
| | | | | |-- ENr111
| | | | | |-- ENr112
| | | | | |-- ENr113
| | | | | |-- ENr114
| | | | | |-- ENr121
| | | | | |-- ENr122
| | | | | |-- ENr123
| | | | | |-- ENr131
| | | | | |-- ENr132
| | | | | |-- ENr133
| | | | | |-- ENr211
| | | | | |-- ENr212
| | | | | |-- ENr213
| | | | | |-- ENr221
| | | | | |-- ENr222
| | | | | |-- ENr223
| | | | | |-- ENr231
| | | | | |-- ENr232
| | | | | |-- ENr233
| | | | | |-- ENr311
| | | | | |-- ENr312
| | | | | |-- ENr313
| | | | | |-- ENr321
| | | | | |-- ENr322
| | | | | |-- ENr323
| | | | | |-- ENr324
| | | | | |-- ENr331
| | | | | |-- ENr332
| | | | | |-- ENr333
| | | | | `-- ENr334
| | | | `-- tba
| | | | |-- ENm001
| | | | |-- ENm002
| | | | |-- ENm003
| | | | |-- ENm004
| | | | |-- ENm005
| | | | |-- ENm006
| | | | |-- ENm007
| | | | |-- ENm008
| | | | |-- ENm009
| | | | |-- ENm010
| | | | |-- ENm011
| | | | |-- ENm012
| | | | |-- ENm013
| | | | |-- ENm014
| | | | |-- ENr111
| | | | |-- ENr112
| | | | |-- ENr113
| | | | |-- ENr114
| | | | |-- ENr121
| | | | |-- ENr122
| | | | |-- ENr123
| | | | |-- ENr131
| | | | |-- ENr132
| | | | |-- ENr133
| | | | |-- ENr211
| | | | |-- ENr212
| | | | |-- ENr213
| | | | |-- ENr221
| | | | |-- ENr222
| | | | |-- ENr223
| | | | |-- ENr231
| | | | |-- ENr232
| | | | |-- ENr233
| | | | |-- ENr311
| | | | |-- ENr312
| | | | |-- ENr313
| | | | |-- ENr321
| | | | |-- ENr322
| | | | |-- ENr323
| | | | |-- ENr324
| | | | |-- ENr331
| | | | |-- ENr332
| | | | |-- ENr333
| | | | `-- ENr334
| | | |-- encode_relabeled
| | | | |-- mavid
| | | | | `-- abs
| | | | `-- tba
| | | | |-- ENm001
| | | | |-- ENm002
| | | | |-- ENm003
| | | | |-- ENm004
| | | | |-- ENm005
| | | | |-- ENm006
| | | | |-- ENm007
| | | | |-- ENm008
| | | | |-- ENm009
| | | | |-- ENm010
| | | | |-- ENm011
| | | | |-- ENm012
| | | | |-- ENm013
| | | | |-- ENm014
| | | | |-- ENr111
| | | | |-- ENr112
| | | | |-- ENr113
| | | | |-- ENr114
| | | | |-- ENr121
| | | | |-- ENr122
| | | | |-- ENr123
| | | | |-- ENr131
| | | | |-- ENr132
| | | | |-- ENr133
| | | | |-- ENr211
| | | | |-- ENr212
| | | | |-- ENr213
| | | | |-- ENr221
| | | | |-- ENr222
| | | | |-- ENr223
| | | | |-- ENr231
| | | | |-- ENr232
| | | | |-- ENr233
| | | | |-- ENr311
| | | | |-- ENr312
| | | | |-- ENr313
| | | | |-- ENr321
| | | | |-- ENr322
| | | | |-- ENr323
| | | | |-- ENr324
| | | | |-- ENr331
| | | | |-- ENr332
| | | | |-- ENr333
| | | | `-- ENr334
| | | |-- fr1
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- mm5
| | | | `-- maf
| | | |-- mm6
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | |-- monDom1
| | | |-- panTro1
| | | | `-- maf
| | | |-- rheMac1
| | | | `-- maf
| | | |-- rheMac2
| | | | `-- maf
| | | |-- rn3
| | | | `-- maf
| | | `-- tetNig1
| | | `-- maf
| | |-- liftOver
| | |-- nib
| | |-- seq
| | `-- tmp
| |-- hg18
| | |-- align
| | | |-- anoCar1
| | | | `-- maf
| | | |-- bosTau2
| | | | `-- maf
| | | |-- bosTau3
| | | | `-- maf
| | | |-- calJac1
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer3
| | | | `-- maf
| | | |-- danRer4
| | | | `-- maf
| | | |-- danRer5
| | | | `-- maf
| | | |-- equCab1
| | | |-- exclude
| | | | |-- multiz17way
| | | | |-- multiz28way.b2z
| | | | |-- multiz3way
| | | | `-- multiz5way
| | | |-- felCat3
| | | |-- fr1
| | | | `-- maf
| | | |-- fr2
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- galGal3
| | | | `-- maf
| | | |-- gasAcu1
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- mm9
| | | | |-- maf
| | | | `-- maf.new
| | | |-- monDom4
| | | | `-- maf
| | | |-- multiz17way
| | | | `-- old-index
| | | |-- multiz28way
| | | | |-- old
| | | | `-- temp
| | | |-- multiz3way
| | | |-- multiz3way.bad
| | | |-- multiz44way
| | | |-- multiz5way
| | | |-- multiz5way.bad
| | | |-- ornAna1
| | | | `-- maf
| | | |-- oryLat1
| | | | `-- maf
| | | |-- panTro1
| | | | `-- maf
| | | |-- panTro2
| | | | `-- maf
| | | |-- ponAbe2
| | | | `-- maf
| | | |-- rheMac1
| | | |-- rheMac2
| | | | `-- maf
| | | |-- rn4
| | | | `-- maf
| | | |-- self
| | | |-- sorAra1
| | | |-- strPur1
| | | |-- strPur2
| | | |-- tetNig1
| | | | `-- maf
| | | |-- tupBel1
| | | |-- xenTro1
| | | `-- xenTro2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- hg18canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- hg18full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- liftOver
| | |-- misc
| | | |-- funDo
| | | |-- phyloP -> phyloP44way.primate
| | | |-- phyloP44way.primate
| | | `-- sift
| | | `-- Human_db_36
| | |-- nib
| | |-- perm_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- hg19
| | |-- align
| | | |-- anoCar1
| | | | `-- maf
| | | |-- bosTau4
| | | | `-- maf
| | | |-- calJac1
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- cavPor3
| | | | `-- maf
| | | |-- choHof1
| | | | `-- maf
| | | |-- danRer5
| | | | `-- maf
| | | |-- dasNov2
| | | | `-- maf
| | | |-- dipOrd1
| | | | `-- maf
| | | |-- echTel1
| | | | `-- maf
| | | |-- equCab2
| | | | `-- maf
| | | |-- eriEur1
| | | | `-- maf
| | | |-- felCat3
| | | | `-- maf
| | | |-- fr2
| | | | `-- maf
| | | |-- galGal3
| | | | `-- maf
| | | |-- gasAcu1
| | | | `-- maf
| | | |-- gorGor1
| | | | `-- maf
| | | |-- macEug1
| | | | `-- maf
| | | |-- micMur1
| | | | `-- maf
| | | |-- mm9
| | | | `-- maf
| | | |-- monDom5
| | | | `-- maf
| | | |-- multiz100way
| | | | |-- alignments
| | | | `-- maf
| | | |-- multiz100way_v1
| | | |-- multiz46way
| | | |-- myoLuc1
| | | | `-- maf
| | | |-- ochPri2
| | | | `-- maf
| | | |-- ornAna1
| | | | `-- maf
| | | |-- oryCun1
| | | | `-- maf
| | | |-- oryLat2
| | | | `-- maf
| | | |-- otoGar1
| | | |-- panTro2
| | | | `-- maf
| | | |-- papHam1
| | | | `-- maf
| | | |-- petMar1
| | | | `-- maf
| | | |-- ponAbe2
| | | | `-- maf
| | | |-- proCap1
| | | | `-- maf
| | | |-- pteVam1
| | | | `-- maf
| | | |-- rheMac2
| | | | `-- maf
| | | |-- rn4
| | | | `-- maf
| | | |-- sorAra1
| | | | `-- maf
| | | |-- speTri1
| | | | `-- maf
| | | |-- taeGut1
| | | | `-- maf
| | | |-- tarSyr1
| | | | `-- maf
| | | |-- tetNig1
| | | | `-- maf
| | | |-- tupBel1
| | | | `-- maf
| | | |-- turTru1
| | | | `-- maf
| | | |-- vicPac1
| | | | `-- maf
| | | `-- xenTro2
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index_archive
| | |-- hg19canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | | `-- cs
| | | |-- bwa_index_v0.7.10-r789
| | | `-- perm_index
| | |-- hg19female
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | | `-- cs
| | | `-- bwa_index_v0.7.10-r789
| | |-- hg19full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | | `-- cs
| | | `-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- misc
| | | |-- funDo
| | | `-- sift
| | | `-- Human_db_37
| | |-- mosaik_jump
| | |-- nib
| | | `-- misc
| | |-- perm_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- hg20
| |-- hg38
| | |-- download
| | | `-- 20140313_seq_hg38
| | |-- hg38canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | `-- bwa_index_v0.7.10-r789
| | |-- hg38female
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | `-- bwa_index_v0.7.10-r789
| | |-- hg38full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | `-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- hg_g1k_v37
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- download
| | | `-- 20140402_SAM_hg_g1k_v37
| | | `-- sam_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- jacJac1
| |-- lMaj5
| | `-- seq
| |-- lengths
| |-- location
| |-- loxAfr1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- loxAfr3
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- melGal1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- melUnd1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- micMur1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- microbes
| | |-- 100
| | | `-- seq
| | |-- 106
| | | `-- seq
| | |-- 10616
| | | `-- seq
| | |-- 10638
| | | `-- seq
| | |-- 10639
| | | `-- seq
| | |-- 10645
| | | `-- seq
| | |-- 10675
| | | `-- seq
| | |-- 10676
| | | `-- seq
| | |-- 10679
| | | `-- seq
| | |-- 10687
| | | `-- seq
| | |-- 10689
| | | `-- seq
| | |-- 10690
| | | `-- seq
| | |-- 10694
| | | `-- seq
| | |-- 10697
| | | `-- seq
| | |-- 10784
| | | `-- seq
| | |-- 10877
| | | `-- seq
| | |-- 10878
| | | `-- seq
| | |-- 11752
| | | `-- seq
| | |-- 12
| | | `-- seq
| | |-- 12388
| | | `-- seq
| | |-- 12416
| | | `-- seq
| | |-- 12468
| | | `-- seq
| | |-- 12469
| | | `-- seq
| | |-- 12475
| | | `-- seq
| | |-- 12508
| | | `-- seq
| | |-- 12512
| | | `-- seq
| | |-- 12514
| | | `-- seq
| | |-- 12521
| | | `-- seq
| | |-- 12530
| | | `-- seq
| | |-- 12554
| | | `-- seq
| | |-- 12607
| | | `-- seq
| | |-- 12609
| | | `-- seq
| | |-- 12637
| | | `-- seq
| | |-- 12716
| | | `-- seq
| | |-- 12720
| | | `-- seq
| | |-- 12931
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 26jan2011
| | | | `-- 1139
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 12950
| | | `-- seq
| | |-- 12952
| | | `-- seq
| | |-- 12953
| | | `-- seq
| | |-- 12997
| | | `-- seq
| | |-- 13001
| | | `-- seq
| | |-- 13006
| | | `-- seq
| | |-- 13030
| | | `-- seq
| | |-- 13040
| | | `-- seq
| | |-- 13067
| | | `-- seq
| | |-- 13082
| | | `-- seq
| | |-- 13120
| | | `-- seq
| | |-- 13126
| | | `-- seq
| | |-- 13127
| | | `-- seq
| | |-- 13145
| | | `-- seq
| | |-- 13146
| | | `-- seq
| | |-- 13151
| | | `-- seq
| | |-- 13162
| | | `-- seq
| | |-- 13163
| | | `-- seq
| | |-- 13217
| | | `-- seq
| | |-- 13282
| | | `-- seq
| | |-- 13291
| | | `-- seq
| | |-- 13355
| | | `-- seq
| | |-- 13356
| | | `-- seq
| | |-- 13370
| | | `-- seq
| | |-- 13378
| | | `-- seq
| | |-- 13384
| | | `-- seq
| | |-- 13389
| | | `-- seq
| | |-- 13403
| | | `-- seq
| | |-- 13418
| | | `-- seq
| | |-- 13427
| | | `-- seq
| | |-- 13435
| | | `-- seq
| | |-- 13443
| | | `-- seq
| | |-- 13454
| | | `-- seq
| | |-- 13462
| | | `-- seq
| | |-- 13473
| | | `-- seq
| | |-- 13478
| | | `-- seq
| | |-- 13485
| | | `-- seq
| | |-- 13496
| | | `-- seq
| | |-- 13548
| | | `-- seq
| | |-- 13551
| | | `-- seq
| | |-- 13603
| | | `-- seq
| | |-- 13617
| | | `-- seq
| | |-- 13623
| | | `-- seq
| | |-- 13624
| | | `-- seq
| | |-- 13642
| | | `-- seq
| | |-- 13643
| | | `-- seq
| | |-- 13649
| | | `-- seq
| | |-- 13654
| | | `-- seq
| | |-- 13655
| | | `-- seq
| | |-- 13760
| | | `-- seq
| | |-- 13773
| | | `-- seq
| | |-- 13875
| | | `-- seq
| | |-- 13884
| | | `-- seq
| | |-- 13885
| | | `-- seq
| | |-- 13887
| | | `-- seq
| | |-- 13888
| | | `-- seq
| | |-- 13901
| | | `-- seq
| | |-- 13908
| | | `-- seq
| | |-- 13909
| | | `-- seq
| | |-- 13910
| | | `-- seq
| | |-- 13911
| | | `-- seq
| | |-- 13913
| | | `-- seq
| | |-- 13914
| | | `-- seq
| | |-- 13915
| | | `-- seq
| | |-- 13920
| | | `-- seq
| | |-- 13942
| | | `-- seq
| | |-- 13943
| | | `-- seq
| | |-- 13946
| | | `-- seq
| | |-- 13947
| | | `-- seq
| | |-- 13953
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | | `-- cs
| | | |-- download
| | | | `-- 31dec2010
| | | | `-- 0136
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 13954
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | | `-- cs
| | | |-- download
| | | | `-- 31dec2010
| | | | `-- 1211
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 13959
| | | `-- seq
| | |-- 13960
| | | `-- seq
| | |-- 13967
| | | `-- seq
| | |-- 15
| | | `-- seq
| | |-- 15596
| | | `-- seq
| | |-- 15604
| | | `-- seq
| | |-- 15642
| | | `-- seq
| | |-- 15644
| | | `-- seq
| | |-- 15660
| | | `-- seq
| | |-- 15691
| | | `-- seq
| | |-- 15708
| | | `-- seq
| | |-- 15746
| | | `-- seq
| | |-- 15747
| | | `-- seq
| | |-- 15749
| | | `-- seq
| | |-- 15750
| | | `-- seq
| | |-- 15751
| | | `-- seq
| | |-- 15754
| | | `-- seq
| | |-- 15755
| | | `-- seq
| | |-- 15756
| | | `-- seq
| | |-- 15757
| | | `-- seq
| | |-- 15758
| | | `-- seq
| | |-- 15759
| | | `-- seq
| | |-- 15760
| | | `-- seq
| | |-- 15761
| | | `-- seq
| | |-- 15762
| | | `-- seq
| | |-- 15766
| | | `-- seq
| | |-- 15770
| | | `-- seq
| | |-- 16062
| | | `-- seq
| | |-- 16067
| | | `-- seq
| | |-- 16070
| | | `-- seq
| | |-- 16079
| | | `-- seq
| | |-- 16081
| | | `-- seq
| | |-- 16083
| | | `-- seq
| | |-- 16088
| | | `-- seq
| | |-- 16095
| | | `-- seq
| | |-- 16137
| | | `-- seq
| | |-- 16146
| | | `-- seq
| | |-- 16148
| | | `-- seq
| | |-- 16184
| | | `-- seq
| | |-- 16190
| | | `-- seq
| | |-- 16203
| | | `-- seq
| | |-- 16208
| | | `-- seq
| | |-- 16230
| | | `-- seq
| | |-- 16235
| | | `-- seq
| | |-- 16249
| | | `-- seq
| | |-- 16251
| | | `-- seq
| | |-- 16252
| | | `-- seq
| | |-- 16259
| | | `-- seq
| | |-- 16297
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 26jan2011
| | | | `-- 1213
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 16304
| | | `-- seq
| | |-- 16306
| | | `-- seq
| | |-- 16313
| | | `-- seq
| | |-- 16319
| | | `-- seq
| | |-- 16321
| | | `-- seq
| | |-- 16351
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 16363
| | | `-- seq
| | |-- 16364
| | | `-- seq
| | |-- 16365
| | | `-- seq
| | |-- 16366
| | | `-- seq
| | |-- 16372
| | | `-- seq
| | |-- 16374
| | | `-- seq
| | |-- 16375
| | | `-- seq
| | |-- 16393
| | | `-- seq
| | |-- 16394
| | | `-- seq
| | |-- 16400
| | | `-- seq
| | |-- 16401
| | | `-- seq
| | |-- 16421
| | | `-- seq
| | |-- 16523
| | | `-- seq
| | |-- 16525
| | | `-- seq
| | |-- 16549
| | | `-- seq
| | |-- 16645
| | | `-- seq
| | |-- 16646
| | | `-- seq
| | |-- 16700
| | | `-- seq
| | |-- 16719
| | | `-- seq
| | |-- 16720
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 16721
| | | `-- seq
| | |-- 16723
| | | `-- seq
| | |-- 16791
| | | `-- seq
| | |-- 16800
| | | `-- seq
| | |-- 16817
| | | `-- seq
| | |-- 16820
| | | `-- seq
| | |-- 16841
| | | `-- seq
| | |-- 16871
| | | `-- seq
| | |-- 17053
| | | `-- seq
| | |-- 17057
| | | `-- seq
| | |-- 17109
| | | `-- seq
| | |-- 17153
| | | `-- seq
| | |-- 17155
| | | `-- seq
| | |-- 17159
| | | `-- seq
| | |-- 17161
| | | `-- seq
| | |-- 17163
| | | `-- seq
| | |-- 17227
| | | `-- seq
| | |-- 17237
| | | `-- seq
| | |-- 17249
| | | `-- seq
| | |-- 17265
| | | `-- seq
| | |-- 17343
| | | `-- seq
| | |-- 17375
| | | `-- seq
| | |-- 17403
| | | `-- seq
| | |-- 17407
| | | `-- seq
| | |-- 17413
| | | `-- seq
| | |-- 17415
| | | `-- seq
| | |-- 17417
| | | `-- seq
| | |-- 17445
| | | `-- seq
| | |-- 17455
| | | `-- seq
| | |-- 17457
| | | `-- seq
| | |-- 17459
| | | `-- seq
| | |-- 17477
| | | `-- seq
| | |-- 17491
| | | `-- seq
| | |-- 176
| | | `-- seq
| | |-- 17629
| | | `-- seq
| | |-- 17639
| | | `-- seq
| | |-- 17643
| | | `-- seq
| | |-- 17679
| | | `-- seq
| | |-- 17729
| | | `-- seq
| | |-- 178
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | | `-- cs
| | | |-- download
| | | | `-- 31dec2010
| | | | `-- 1242
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 17811
| | | `-- seq
| | |-- 17823
| | | `-- seq
| | |-- 17929
| | | `-- seq
| | |-- 17953
| | | `-- seq
| | |-- 18007
| | | `-- seq
| | |-- 18059
| | | `-- seq
| | |-- 18083
| | | `-- seq
| | |-- 18255
| | | `-- seq
| | |-- 18267
| | | `-- seq
| | |-- 18271
| | | `-- seq
| | |-- 184
| | | `-- seq
| | |-- 18459
| | | `-- seq
| | |-- 18509
| | | `-- seq
| | |-- 18633
| | | `-- seq
| | |-- 18637
| | | `-- seq
| | |-- 18789
| | | `-- seq
| | |-- 18797
| | | `-- seq
| | |-- 18801
| | | `-- seq
| | |-- 18809
| | | `-- seq
| | |-- 18817
| | | `-- seq
| | |-- 18883
| | | `-- seq
| | |-- 189
| | | `-- seq
| | |-- 18963
| | | `-- seq
| | |-- 18965
| | | `-- seq
| | |-- 18981
| | | `-- seq
| | |-- 190
| | | `-- seq
| | |-- 19065
| | | `-- seq
| | |-- 19087
| | | `-- seq
| | |-- 19135
| | | `-- seq
| | |-- 19193
| | | `-- seq
| | |-- 19227
| | | `-- seq
| | |-- 19259
| | | `-- seq
| | |-- 19265
| | | `-- seq
| | |-- 193
| | | `-- seq
| | |-- 19469
| | | `-- seq
| | |-- 19485
| | | `-- seq
| | |-- 19489
| | | `-- seq
| | |-- 19517
| | | `-- seq
| | |-- 19519
| | | `-- seq
| | |-- 19521
| | | `-- seq
| | |-- 19543
| | | `-- seq
| | |-- 19575
| | | `-- seq
| | |-- 19617
| | | `-- seq
| | |-- 19619
| | | `-- seq
| | |-- 19639
| | | `-- seq
| | |-- 19857
| | | `-- seq
| | |-- 19943
| | | `-- seq
| | |-- 19979
| | | `-- seq
| | |-- 20039
| | | `-- seq
| | |-- 20079
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 20083
| | | `-- seq
| | |-- 20197
| | | `-- seq
| | |-- 20241
| | | `-- seq
| | |-- 20243
| | | `-- seq
| | |-- 20371
| | | `-- seq
| | |-- 20391
| | | `-- seq
| | |-- 21047
| | | `-- seq
| | |-- 213
| | | `-- seq
| | |-- 220
| | | `-- seq
| | |-- 223
| | | `-- seq
| | |-- 228
| | | `-- seq
| | |-- 229
| | | `-- seq
| | |-- 237
| | | `-- seq
| | |-- 238
| | | `-- seq
| | |-- 241
| | | `-- seq
| | |-- 247
| | | `-- seq
| | |-- 25
| | | `-- seq
| | |-- 250
| | | `-- seq
| | |-- 256
| | | `-- seq
| | |-- 257
| | | `-- seq
| | |-- 259
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 26
| | | `-- seq
| | |-- 264
| | | `-- seq
| | |-- 265
| | | `-- seq
| | |-- 266
| | | `-- seq
| | |-- 267
| | | `-- seq
| | |-- 270
| | | `-- seq
| | |-- 276
| | | `-- seq
| | |-- 277
| | | `-- seq
| | |-- 278
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 27803
| | | `-- seq
| | |-- 27835
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- picard_index
| | | |-- sam_index
| | | `-- seq
| | |-- 27853
| | | `-- seq
| | |-- 279
| | | `-- seq
| | |-- 28035
| | | `-- seq
| | |-- 28109
| | | `-- seq
| | |-- 28111
| | | `-- seq
| | |-- 28135
| | | `-- seq
| | |-- 28247
| | | `-- seq
| | |-- 283
| | | `-- seq
| | |-- 285
| | | `-- seq
| | |-- 28505
| | | `-- seq
| | |-- 28507
| | | `-- seq
| | |-- 28583
| | | `-- seq
| | |-- 28585
| | | `-- seq
| | |-- 286
| | | `-- seq
| | |-- 28743
| | | `-- seq
| | |-- 288
| | | `-- seq
| | |-- 28921
| | | `-- seq
| | |-- 297
| | | `-- seq
| | |-- 301
| | | `-- seq
| | |-- 304
| | | `-- seq
| | |-- 306
| | | `-- seq
| | |-- 307
| | | `-- seq
| | |-- 31
| | | `-- seq
| | |-- 311
| | | `-- seq
| | |-- 312
| | | `-- seq
| | |-- 314
| | | `-- seq
| | |-- 320
| | | `-- seq
| | |-- 323
| | | `-- seq
| | |-- 325
| | | `-- seq
| | |-- 326
| | | `-- seq
| | |-- 327
| | | `-- seq
| | |-- 329
| | | `-- seq
| | |-- 330
| | | `-- seq
| | |-- 333
| | | `-- seq
| | |-- 334
| | | `-- seq
| | |-- 336
| | | `-- seq
| | |-- 344
| | | `-- seq
| | |-- 355
| | | `-- seq
| | |-- 359
| | | `-- seq
| | |-- 370
| | | `-- seq
| | |-- 377
| | | `-- seq
| | |-- 38
| | | `-- seq
| | |-- 384
| | | `-- seq
| | |-- 386
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- 388
| | | `-- seq
| | |-- 4
| | | `-- seq
| | |-- 401
| | | `-- seq
| | |-- 402
| | | `-- seq
| | |-- 403
| | | `-- seq
| | |-- 404
| | | `-- seq
| | |-- 408
| | | `-- seq
| | |-- 409
| | | `-- seq
| | |-- 42
| | | `-- seq
| | |-- 420
| | | `-- seq
| | |-- 43
| | | `-- seq
| | |-- 44
| | | `-- seq
| | |-- 46
| | | `-- seq
| | |-- 59
| | | `-- seq
| | |-- 63
| | | `-- seq
| | |-- 64
| | | `-- seq
| | |-- 66
| | | `-- seq
| | |-- 74
| | | `-- seq
| | |-- 77
| | | `-- seq
| | |-- 78
| | | `-- seq
| | |-- 79
| | | `-- seq
| | |-- 81
| | | `-- seq
| | |-- 82
| | | `-- seq
| | |-- 84
| | | `-- seq
| | |-- 85
| | | `-- seq
| | |-- 87
| | | `-- seq
| | |-- 88
| | | `-- seq
| | |-- 89
| | | `-- seq
| | |-- 90
| | | `-- seq
| | |-- 91
| | | `-- seq
| | |-- 92
| | | `-- seq
| | |-- 95
| | | `-- seq
| | |-- 9618
| | | `-- seq
| | |-- 9619
| | | `-- seq
| | |-- 9636
| | | `-- seq
| | |-- 9638
| | | `-- seq
| | |-- 99
| | | `-- seq
| | |-- Staphylococcus_aureus_aureus_USA300_FPR3757
| | |-- Xanthomonas_oryzae_PXO99A
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 26jan2011
| | | | `-- 1216
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- acidBact_ELLIN345
| | | `-- seq
| | |-- acidCell_11B
| | | `-- seq
| | |-- acidCryp_JF_5
| | | `-- seq
| | |-- acidJS42
| | | `-- seq
| | |-- acinSp_ADP1
| | | `-- seq
| | |-- actiPleu_L20
| | | `-- seq
| | |-- aerPer1
| | | `-- seq
| | |-- aeroHydr_ATCC7966
| | | `-- seq
| | |-- alcaBork_SK2
| | | `-- seq
| | |-- alkaEhrl_MLHE_1
| | | `-- seq
| | |-- anabVari_ATCC29413
| | | `-- seq
| | |-- anaeDeha_2CP_C
| | | `-- seq
| | |-- anapMarg_ST_MARIES
| | | `-- seq
| | |-- aquiAeol
| | | `-- seq
| | |-- archFulg1
| | | `-- seq
| | |-- arthFB24
| | | `-- seq
| | |-- azoaSp_EBN1
| | | `-- seq
| | |-- azorCaul2
| | | `-- seq
| | |-- baciAnth_AMES
| | | `-- seq
| | |-- baciHalo
| | | `-- seq
| | |-- baciSubt
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- picard_index
| | | |-- sam_index
| | | `-- seq
| | |-- bactThet_VPI_5482
| | | `-- seq
| | |-- bartHens_HOUSTON_1
| | | `-- seq
| | |-- baumCica_HOMALODISCA
| | | `-- seq
| | |-- bdelBact
| | | `-- seq
| | |-- bifiLong
| | | `-- seq
| | |-- blocFlor
| | | `-- seq
| | |-- bordBron
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- picard_index
| | | |-- sam_index
| | | `-- seq
| | |-- borrBurg
| | | `-- seq
| | |-- bradJapo
| | | `-- seq
| | |-- brucMeli
| | | `-- seq
| | |-- buchSp
| | | `-- seq
| | |-- burk383
| | | `-- seq
| | |-- burkCeno_AU_1054
| | | `-- seq
| | |-- burkCeno_HI2424
| | | `-- seq
| | |-- burkCepa_AMMD
| | | `-- seq
| | |-- burkMall_ATCC23344
| | | `-- seq
| | |-- burkPseu_1106A
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | | `-- cs
| | | |-- download
| | | | `-- 31dec2010
| | | | `-- 1128
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- burkThai_E264
| | | `-- seq
| | |-- burkViet_G4
| | | `-- seq
| | |-- burkXeno_LB400
| | | `-- seq
| | |-- caldMaqu1
| | | `-- seq
| | |-- caldSacc_DSM8903
| | | `-- seq
| | |-- campFetu_82_40
| | | `-- seq
| | |-- campJeju
| | | `-- seq
| | |-- campJeju_81_176
| | | `-- seq
| | |-- campJeju_RM1221
| | | `-- seq
| | |-- candCars_RUDDII
| | | `-- seq
| | |-- candPela_UBIQUE_HTCC1
| | | `-- seq
| | |-- carbHydr_Z_2901
| | | `-- seq
| | |-- caulCres
| | | `-- seq
| | |-- chlaPneu_CWL029
| | | `-- seq
| | |-- chlaTrac
| | | `-- seq
| | |-- chloChlo_CAD3
| | | `-- seq
| | |-- chloTepi_TLS
| | | `-- seq
| | |-- chroSale_DSM3043
| | | `-- seq
| | |-- chroViol
| | | `-- seq
| | |-- clavMich_NCPPB_382
| | | `-- seq
| | |-- colwPsyc_34H
| | | `-- seq
| | |-- coryEffi_YS_314
| | | `-- seq
| | |-- coxiBurn
| | | `-- seq
| | |-- cytoHutc_ATCC33406
| | | `-- seq
| | |-- dechArom_RCB
| | | `-- seq
| | |-- dehaEthe_195
| | | `-- seq
| | |-- deinGeot_DSM11300
| | | `-- seq
| | |-- deinRadi
| | | `-- seq
| | |-- desuHafn_Y51
| | | `-- seq
| | |-- desuPsyc_LSV54
| | | `-- seq
| | |-- desuRedu_MI_1
| | | `-- seq
| | |-- desuVulg_HILDENBOROUG
| | | `-- seq
| | |-- dichNodo_VCS1703A
| | | `-- seq
| | |-- ehrlRumi_WELGEVONDEN
| | | `-- seq
| | |-- ente638
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- nib
| | | |-- sam_index
| | | |-- seq
| | | | `-- original
| | | `-- srma_index
| | |-- enteFaec_V583
| | | `-- seq
| | |-- erwiCaro_ATROSEPTICA
| | | `-- seq
| | |-- erytLito_HTCC2594
| | | `-- seq
| | |-- eschColi_APEC_O1
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 16dec2010
| | | | `-- 1522
| | | |-- nib
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- eschColi_CFT073
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 16dec2010
| | | | `-- 1641
| | | |-- nib
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- eschColi_EC4115
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- eschColi_EDL933
| | |-- eschColi_K12
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 20dec2010
| | | | `-- 1332
| | | |-- nib
| | | |-- sam_index
| | | |-- seq
| | | |-- srma_index
| | | `-- tmap_index
| | |-- eschColi_MG1655
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- eschColi_O157H7
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- download
| | | | `-- 20dec2010
| | | | `-- 1419
| | | |-- nib
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- eschColi_TW14359
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- flavJohn_UW101
| | | `-- seq
| | |-- franCcI3
| | | `-- seq
| | |-- franTula_TULARENSIS
| | | `-- seq
| | |-- fusoNucl
| | | `-- seq
| | |-- geobKaus_HTA426
| | | `-- seq
| | |-- geobMeta_GS15
| | | `-- seq
| | |-- geobSulf
| | | `-- seq
| | |-- geobTher_NG80_2
| | | `-- seq
| | |-- geobUran_RF4
| | | `-- seq
| | |-- gloeViol
| | | `-- seq
| | |-- glucOxyd_621H
| | | `-- seq
| | |-- gramFors_KT0803
| | | `-- seq
| | |-- granBeth_CGDNIH1
| | | `-- seq
| | |-- haemInfl_KW20
| | | `-- seq
| | |-- haemSomn_129PT
| | | `-- seq
| | |-- haheChej_KCTC_2396
| | | `-- seq
| | |-- halMar1
| | | `-- seq
| | |-- haloHalo1
| | | `-- seq
| | |-- haloHalo_SL1
| | | `-- seq
| | |-- haloWals1
| | | `-- seq
| | |-- heliAcin_SHEEBA
| | | `-- seq
| | |-- heliHepa
| | | `-- seq
| | |-- heliPylo_26695
| | | `-- seq
| | |-- heliPylo_HPAG1
| | | `-- seq
| | |-- heliPylo_J99
| | | `-- seq
| | |-- hermArse
| | | `-- seq
| | |-- hypeButy1
| | | `-- seq
| | |-- hyphNept_ATCC15444
| | | `-- seq
| | |-- idioLoih_L2TR
| | | `-- seq
| | |-- jannCCS1
| | | `-- seq
| | |-- lactLact
| | | `-- seq
| | |-- lactPlan
| | | `-- seq
| | |-- lactSali_UCC118
| | | `-- seq
| | |-- lawsIntr_PHE_MN1_00
| | | `-- seq
| | |-- legiPneu_PHILADELPHIA
| | | `-- seq
| | |-- leifXyli_XYLI_CTCB0
| | | `-- seq
| | |-- leptInte
| | | `-- seq
| | |-- leucMese_ATCC8293
| | | `-- seq
| | |-- listInno
| | | `-- seq
| | |-- magnMC1
| | | `-- seq
| | |-- magnMagn_AMB_1
| | | `-- seq
| | |-- mannSucc_MBEL55E
| | | `-- seq
| | |-- mariAqua_VT8
| | | `-- seq
| | |-- mariMari_MCS10
| | | `-- seq
| | |-- mculMari1
| | | `-- seq
| | |-- mesoFlor_L1
| | | `-- seq
| | |-- mesoLoti
| | | `-- seq
| | |-- metAce1
| | | `-- seq
| | |-- metMar1
| | | `-- seq
| | |-- metaSedu
| | | `-- seq
| | |-- methAeol1
| | | `-- seq
| | |-- methBark1
| | | `-- seq
| | |-- methBoon1
| | | `-- seq
| | |-- methBurt2
| | | `-- seq
| | |-- methCaps_BATH
| | | `-- seq
| | |-- methFlag_KT
| | | `-- seq
| | |-- methHung1
| | | `-- seq
| | |-- methJann1
| | | `-- seq
| | |-- methKand1
| | | `-- seq
| | |-- methLabrZ_1
| | | `-- seq
| | |-- methMari_C5_1
| | | `-- seq
| | |-- methMari_C7
| | | `-- seq
| | |-- methMaze1
| | | `-- seq
| | |-- methPetr_PM1
| | | `-- seq
| | |-- methSmit1
| | | `-- seq
| | |-- methStad1
| | | `-- seq
| | |-- methTher1
| | | `-- seq
| | |-- methTherPT1
| | | `-- seq
| | |-- methVann1
| | | `-- seq
| | |-- moorTher_ATCC39073
| | | `-- seq
| | |-- mycoGeni
| | | `-- seq
| | |-- mycoTube_H37RV
| | | `-- seq
| | |-- myxoXant_DK_1622
| | | `-- seq
| | |-- nanEqu1
| | | `-- seq
| | |-- natrPhar1
| | | `-- seq
| | |-- neisGono_FA1090_1
| | | `-- seq
| | |-- neisMeni_FAM18_1
| | | `-- seq
| | |-- neisMeni_MC58_1
| | | `-- seq
| | |-- neisMeni_Z2491_1
| | | `-- seq
| | |-- neorSenn_MIYAYAMA
| | | `-- seq
| | |-- nitrEuro
| | | `-- seq
| | |-- nitrMult_ATCC25196
| | | `-- seq
| | |-- nitrOcea_ATCC19707
| | | `-- seq
| | |-- nitrWino_NB_255
| | | `-- seq
| | |-- nocaFarc_IFM10152
| | | `-- seq
| | |-- nocaJS61
| | | `-- seq
| | |-- nostSp
| | | `-- seq
| | |-- novoArom_DSM12444
| | | `-- seq
| | |-- oceaIhey
| | | `-- seq
| | |-- oenoOeni_PSU_1
| | | `-- seq
| | |-- onioYell_PHYTOPLASMA
| | | `-- seq
| | |-- orieTsut_BORYONG
| | | `-- seq
| | |-- paraDeni_PD1222
| | | `-- seq
| | |-- paraSp_UWE25
| | | `-- seq
| | |-- pastMult
| | | `-- seq
| | |-- pediPent_ATCC25745
| | | `-- seq
| | |-- peloCarb
| | | `-- seq
| | |-- peloLute_DSM273
| | | `-- seq
| | |-- peloTher_SI
| | | `-- seq
| | |-- photLumi
| | | `-- seq
| | |-- photProf_SS9
| | | `-- seq
| | |-- picrTorr1
| | | `-- seq
| | |-- pireSp
| | | `-- seq
| | |-- polaJS66
| | | `-- seq
| | |-- polyQLWP
| | | `-- seq
| | |-- porpGing_W83
| | | `-- seq
| | |-- procMari_CCMP1375
| | | `-- seq
| | |-- propAcne_KPA171202
| | | `-- seq
| | |-- pseuAeru
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index
| | | |-- sam_index
| | | |-- seq
| | | `-- srma_index
| | |-- pseuHalo_TAC125
| | | `-- seq
| | |-- psycArct_273_4
| | | `-- seq
| | |-- psycIngr_37
| | | `-- seq
| | |-- pyrAby1
| | | `-- seq
| | |-- pyrAer1
| | | `-- seq
| | |-- pyrFur2
| | | `-- seq
| | |-- pyrHor1
| | | `-- seq
| | |-- pyroArse1
| | | `-- seq
| | |-- pyroCali1
| | | `-- seq
| | |-- pyroIsla1
| | | `-- seq
| | |-- ralsEutr_JMP134
| | | `-- seq
| | |-- ralsSola
| | | `-- seq
| | |-- rhizEtli_CFN_42
| | | `-- seq
| | |-- rhodPalu_CGA009
| | | `-- seq
| | |-- rhodRHA1
| | | `-- seq
| | |-- rhodRubr_ATCC11170
| | | `-- seq
| | |-- rhodSpha_2_4_1
| | | `-- seq
| | |-- rickBell_RML369_C
| | | `-- seq
| | |-- roseDeni_OCH_114
| | | `-- seq
| | |-- rubrXyla_DSM9941
| | | `-- seq
| | |-- saccDegr_2_40
| | | `-- seq
| | |-- saccEryt_NRRL_2338
| | | `-- seq
| | |-- saliRube_DSM13855
| | | `-- seq
| | |-- saliTrop_CNB_440
| | | `-- seq
| | |-- salmEnte_PARATYPI_ATC
| | | `-- seq
| | |-- salmTyph
| | | `-- seq
| | |-- salmTyph_TY2
| | | `-- seq
| | |-- shewANA3
| | | `-- seq
| | |-- shewAmaz
| | | `-- seq
| | |-- shewBalt
| | | `-- seq
| | |-- shewDeni
| | | `-- seq
| | |-- shewFrig
| | | `-- seq
| | |-- shewLoihPV4
| | | `-- seq
| | |-- shewMR4
| | | `-- seq
| | |-- shewMR7
| | | `-- seq
| | |-- shewOnei
| | | `-- seq
| | |-- shewPutrCN32
| | | `-- seq
| | |-- shewW318
| | | `-- seq
| | |-- shigFlex_2A
| | | `-- seq
| | |-- siliPome_DSS_3
| | | `-- seq
| | |-- sinoMeli
| | | `-- seq
| | |-- sodaGlos_MORSITANS
| | | `-- seq
| | |-- soliUsit_ELLIN6076
| | | `-- seq
| | |-- sphiAlas_RB2256
| | | `-- seq
| | |-- stapAure_MU50
| | | `-- seq
| | |-- stapMari1
| | | `-- seq
| | |-- streCoel
| | | `-- seq
| | |-- strePyog_M1_GAS
| | | `-- seq
| | |-- sulSol1
| | | `-- seq
| | |-- sulfAcid1
| | | `-- seq
| | |-- sulfToko1
| | | `-- seq
| | |-- symbTher_IAM14863
| | | `-- seq
| | |-- synePCC6
| | | `-- seq
| | |-- syneSp_WH8102
| | | `-- seq
| | |-- syntAcid_SB
| | | `-- seq
| | |-- syntFuma_MPOB
| | | `-- seq
| | |-- syntWolf_GOETTINGEN
| | | `-- seq
| | |-- therAcid1
| | | `-- seq
| | |-- therElon
| | | `-- seq
| | |-- therFusc_YX
| | | `-- seq
| | |-- therKoda1
| | | `-- seq
| | |-- therMari
| | | `-- seq
| | |-- therPend1
| | | `-- seq
| | |-- therPetr_RKU_1
| | | `-- seq
| | |-- therTeng
| | | `-- seq
| | |-- therTher_HB27
| | | `-- seq
| | |-- therTher_HB8
| | | `-- seq
| | |-- therVolc1
| | | `-- seq
| | |-- thioCrun_XCL_2
| | | `-- seq
| | |-- thioDeni_ATCC25259
| | | `-- seq
| | |-- thioDeni_ATCC33889
| | | `-- seq
| | |-- trepPall
| | | `-- seq
| | |-- tricEryt_IMS101
| | | `-- seq
| | |-- tropWhip_TW08_27
| | | `-- seq
| | |-- uncuMeth_RCI
| | | `-- seq
| | |-- ureaUrea
| | | `-- seq
| | |-- vermEise_EF01_2
| | | `-- seq
| | |-- vibrChol1
| | | `-- seq
| | |-- vibrChol_O395_1
| | | `-- seq
| | |-- vibrFisc_ES114_1
| | | `-- seq
| | |-- vibrPara1
| | | `-- seq
| | |-- vibrVuln_CMCP6_1
| | | `-- seq
| | |-- vibrVuln_YJ016_1
| | | `-- seq
| | |-- wiggBrev
| | | `-- seq
| | |-- wolbEndo_OF_DROSOPHIL
| | | `-- seq
| | |-- woliSucc
| | | `-- seq
| | |-- xantCamp
| | | `-- seq
| | |-- xyleFast
| | | `-- seq
| | |-- yersPest_CO92
| | | `-- seq
| | `-- zymoMobi_ZM4
| | `-- seq
| |-- mm10
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- chrom
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- mm2
| |-- mm3
| |-- mm4
| |-- mm5
| | |-- align
| | |-- liftOver
| | |-- seq
| | `-- tmp
| |-- mm6
| | |-- align
| | | |-- bosTau1
| | | | `-- maf
| | | |-- canFam1
| | | | `-- maf
| | | |-- danRer2
| | | | `-- maf
| | | |-- fr1
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- hg16
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- monDom1
| | | |-- panTro1
| | | | `-- maf
| | | |-- rn3
| | | | `-- maf
| | | |-- tetNig1
| | | | `-- maf
| | | `-- xenTro1
| | |-- liftOver
| | |-- seq
| | `-- tmp
| |-- mm7
| | |-- align
| | | |-- bosTau2
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer3
| | | | `-- maf
| | | |-- fr1
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- panTro1
| | | | `-- maf
| | | |-- rheMac1
| | | | `-- maf
| | | |-- rn3
| | | | `-- maf
| | | |-- tetNig1
| | | | `-- maf
| | | `-- xenTro1
| | |-- liftOver
| | |-- nib
| | `-- seq
| |-- mm8
| | |-- align
| | | |-- bosTau2
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer3
| | | | `-- maf
| | | |-- danRer4
| | | | `-- maf
| | | |-- fr1
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- monDom4
| | | | `-- maf
| | | |-- multiz17way
| | | |-- panTro1
| | | | `-- maf
| | | |-- rheMac2
| | | | `-- maf
| | | |-- rn4
| | | | `-- maf
| | | |-- tetNig1
| | | | `-- maf
| | | |-- xenTro1
| | | `-- xenTro2
| | | `-- maf
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- mm8canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- mm8full
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- mm9
| | |-- align
| | | |-- anoCar1
| | | |-- bosTau3
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer5
| | | |-- equCab1
| | | |-- fr2
| | | |-- galGal3
| | | |-- gasAcu1
| | | |-- hg18
| | | |-- monDom4
| | | |-- multiz30way
| | | | `-- maf
| | | |-- ornAna1
| | | |-- oryLat1
| | | |-- panTro2
| | | |-- rheMac2
| | | |-- rn4
| | | | `-- tmp
| | | `-- tetNig1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> mm9full/bwa_index_v0.7.10-r789
| | |-- bwa_index_archive
| | |-- liftOver
| | |-- mm9canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | `-- bwa_index_v0.7.10-r789
| | |-- mm9female
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | `-- bwa_index_v0.7.10-r789
| | |-- mm9full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | |-- bwa_index -> bwa_index_v0.7.10-r789
| | | |-- bwa_index_v0.5.9-r16
| | | | `-- cs
| | | `-- bwa_index_v0.7.10-r789
| | |-- mosaik_jump
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- monDom1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- monDom2
| | `-- seq
| |-- monDom4
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- monDom5
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- musMus10 -> mm10
| |-- musMus5 -> mm5
| |-- musMus6 -> mm6
| |-- musMus7 -> mm7
| |-- musMus8 -> mm8
| |-- musMus9 -> mm9
| |-- myoLuc2
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- nomLeu1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- nomLeu2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- nomLeu3
| | `-- seq
| |-- ornAna1
| | |-- align
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- new
| | |-- picard_index
| | |-- quality_scores
| | |-- rmsk
| | `-- sam_index
| |-- oryCun1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- oryCun2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- oryLat1
| | |-- align
| | |-- nib
| | |-- seq
| | `-- tmp
| |-- oryLat2
| | |-- align
| | |-- liftOver
| | |-- oryLat2canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- oryLat2full
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | |-- srma_index
| | `-- tmp
| |-- oryza_sativa_japonica_nipponbare_IRGSP4.0
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- otoGar1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- otoGar3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- oviAri1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- pUC18
| | `-- seq
| |-- panTro1
| | |-- align
| | | |-- hg16
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm6
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | `-- mm8
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- panTro2
| | |-- align
| | | |-- calJac1
| | | | `-- maf
| | | |-- calJac3
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer4
| | | | `-- maf
| | | |-- equCab1
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- hg19
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- mm9
| | | | `-- maf
| | | |-- monDom4
| | | | `-- maf
| | | |-- ponAbe2
| | | | `-- maf
| | | |-- rheMac2
| | | | `-- maf
| | | `-- rn4
| | | `-- maf
| | |-- liftOver
| | |-- nib
| | |-- panTro2canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- panTro2full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- panTro3
| | |-- align
| | | |-- calJac3
| | | | `-- maf
| | | |-- canFam2
| | | | `-- maf
| | | |-- danRer7
| | | | `-- maf
| | | |-- equCab2
| | | | `-- maf
| | | |-- galGal3
| | | | `-- maf
| | | |-- hg19
| | | | `-- maf
| | | |-- mm9
| | | | `-- maf
| | | |-- ponAbe2
| | | | `-- maf
| | | `-- rheMac2
| | | `-- maf
| | |-- liftOver
| | |-- panTro3canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- panTro3full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- panTro4
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- papHam1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- petMar1
| | |-- align
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- phiX
| | |-- align
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | | `-- cs
| | |-- liftOver
| | |-- perm_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | |-- srma_index
| | |-- tmap_index
| | `-- tmp
| |-- ponAbe2
| | |-- align
| | | |-- calJac1
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm9
| | | | `-- maf
| | | |-- monDom4
| | | | `-- maf
| | | |-- multiz8way
| | | | `-- maf
| | | |-- ornAna1
| | | | `-- maf
| | | |-- panTro2
| | | | `-- maf
| | | `-- rheMac2
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- priPac1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- regions
| |-- rheMac1
| | `-- seq
| |-- rheMac2
| | |-- align
| | | |-- hg18
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | `-- rn4
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- rheMac3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- rn3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- rn4
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- quality_scores
| | |-- rn4canon
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- rn4full
| | | |-- bowtie2_index
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- sam_index
| | `-- seq
| |-- rn5
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- sacCer1
| | |-- align
| | |-- liftOver
| | |-- nib
| | |-- seq
| | `-- tmp
| |-- sacCer2
| | |-- align
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- perm_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | `-- tmp
| |-- sacCer3
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- saiBol1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- sarHar1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- sorAra1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- speTri2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- strPur2
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- strPur3
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- download
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- susScr1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- susScr2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- susScr3
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index -> bwa_index_v0.7.10-r789
| | |-- bwa_index_v0.5.9-r16
| | |-- bwa_index_v0.7.10-r789
| | |-- liftOver
| | |-- nib
| | | `-- misc
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | |-- seq2
| | `-- snp
| |-- taeGut1
| | |-- align
| | |-- annotation
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- perm_index
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | |-- seq
| | |-- taeGut1canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | |-- taeGut1full
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | `-- tmp
| |-- tarSyr1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- tetNig1
| | |-- align
| | | |-- danRer3
| | | | `-- maf
| | | |-- danRer4
| | | | `-- maf
| | | |-- fr1
| | | | `-- maf
| | | |-- hg17
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm6
| | | | `-- maf
| | | |-- mm7
| | | | `-- maf
| | | `-- mm8
| | | `-- maf
| | |-- liftOver
| | |-- nib
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | |-- tetNig1canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | `-- tetNig1full
| | |-- bowtie_index
| | | `-- cs
| | `-- bwa_index
| |-- tetNig2
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | |-- seq
| | |-- tetNig2canon
| | | |-- bowtie_index
| | | | `-- cs
| | | `-- bwa_index
| | `-- tetNig2full
| | |-- bowtie_index
| | | `-- cs
| | `-- bwa_index
| |-- triCas2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- tupBel1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- quality_scores
| | |-- sam_index
| | `-- seq
| |-- turTru2
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- venter1
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- sam_index
| | |-- seq
| | `-- srma_index
| |-- xenTro1
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| |-- xenTro2
| | |-- align
| | | |-- anoCar1
| | | | `-- maf
| | | |-- danRer4
| | | | `-- maf
| | | |-- galGal2
| | | | `-- maf
| | | |-- galGal3
| | | | `-- maf
| | | |-- hg18
| | | | `-- maf
| | | |-- mm8
| | | | `-- maf
| | | |-- mm9
| | | | `-- maf
| | | |-- monDom4
| | | | `-- maf
| | | `-- rn4
| | | `-- maf
| | |-- bowtie2_index
| | |-- bowtie_index
| | | `-- cs
| | |-- bwa_index
| | |-- liftOver
| | |-- picard_index
| | |-- sam_index
| | `-- seq
| `-- xenTro3
| |-- bowtie2_index
| |-- bowtie_index
| | `-- cs
| |-- bwa_index
| |-- liftOver
| |-- picard_index
| |-- sam_index
| `-- seq
`-- managed
|-- bin
|-- bowtie2_index
| |-- Amel_4.5
| |-- Schizosaccharomyces_pombe_1.1
| |-- allMis1
| |-- apiMel4
| |-- aptMan1
| |-- bosTau8
| |-- cerSim1
| |-- danRer10
| |-- dasNov3
| |-- dm6
| |-- equCab1
| |-- equCab2
| |-- eschColi_K12
| |-- felCat8
| |-- gadMor1
| |-- galGal3canon
| |-- galGal3full
| |-- galGal4
| |-- galgal4
| |-- loxAfr1
| |-- loxAfr3
| |-- melGal1
| |-- melUnd1
| |-- musFur1
| |-- nomLeu3
| |-- oryza_sativa_japonica_nipponbare_IRGSP4.0
| |-- panPan1
| |-- papAnu2
| |-- rheMac2
| |-- rheMac3
| |-- rn6
| |-- sacCer2
| |-- sacCer3
| |-- vicPac1
| `-- vicPac2
|-- bwa_mem_index
| |-- Amel_4.5
| |-- Schizosaccharomyces_pombe_1.1
| |-- allMis1
| |-- apiMel4
| |-- aptMan1
| |-- bosTau8
| |-- bosTauMd3
| |-- canFam2
| |-- canFam3
| |-- ce9
| |-- cerSim1
| |-- dasNov3
| |-- dm6
| |-- equCab1
| |-- equCab2
| |-- eschColi_K12
| |-- felCat5
| |-- felCat8
| |-- gadMor1
| |-- galGal3canon
| |-- galGal3full
| |-- galGal4
| |-- hg19_rCRS_pUC18_phiX174
| |-- loxAfr1
| |-- loxAfr3
| |-- melGal1
| |-- melUnd1
| |-- musFur1
| |-- nomLeu3
| |-- otoGar1
| |-- otoGar3
| |-- panPan1
| |-- panTro3canon
| |-- panTro3full
| |-- panTro4
| |-- papAnu2
| |-- papHam1
| |-- rheMac2
| |-- rheMac3
| |-- rn6
| |-- sacCer2
| |-- sacCer3
| |-- susScr2
| |-- turTru2
| |-- vicPac1
| `-- vicPac2
|-- hisat2_index
| |-- Amel_4.5
| |-- Schizosaccharomyces_pombe_1.1
| |-- allMis1
| |-- apiMel4
| |-- aptMan1
| |-- bosTau7
| |-- bosTau8
| |-- bosTauMd3
| |-- canFam2
| |-- canFam3
| |-- ce10
| |-- ce9
| |-- cerSim1
| |-- dasNov3
| |-- dm3
| |-- dm6
| |-- equCab1
| |-- equCab2
| |-- eschColi_K12
| |-- felCat5
| |-- felCat8
| |-- gadMor1
| |-- galGal3
| |-- galGal4
| |-- hg19
| |-- hg19_rCRS_pUC18_phiX174
| |-- hg19canon
| |-- hg19female
| |-- hg38
| |-- hg38canon
| |-- hg38female