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Extract mature and precursor miRNA list from miRBase gff3 file. Can be used for inter-conversion
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| # Extract mature and precursor miRNA list from miRBase gff3 file | |
| # Can be used for interconversion | |
| grep -v '#' hsa.gff3 | grep -w "miRNA" | cut -f9 > temp | |
| paste <(cut -d ';' -f1 temp | cut -d '=' -f1) <(cut -d ';' -f2 temp | cut -d '=' -f1) <(cut -d ';' -f3 temp | cut -d '=' -f1) <(cut -d ';' -f4 temp | cut -d '=' -f1) | head -n1 >> miRbaseIDs.tsv | |
| paste <(cut -d ';' -f1 temp | cut -d '=' -f2) <(cut -d ';' -f2 temp | cut -d '=' -f2) <(cut -d ';' -f3 temp | cut -d '=' -f2) <(cut -d ';' -f4 temp | cut -d '=' -f2) >> miRbaseIDs.tsv |
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