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ag1805x/SRRtoGSM

Last active March 24, 2023 11:43
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Extract GSM id for a SRR id.
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SRRtoGSM
#Using NCBI's efetch to retrive GSM id (sample id) from a given SRR id(run id)
efetch -db sra -id SRR2453355 -format xml | xmllint --xpath "EXPERIMENT_PACKAGE_SET/EXPERIMENT_PACKAGE/EXPERIMENT/@alias" - | cut -d \" -f2
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