SED-ML L1V4: example showing how to use CVODE+KINSOL

parabola_dae_model.sedml

<?xml version='1.0' encoding='UTF-8'?>
<sedML level="1" version="4" xmlns="http://sed-ml.org/sed-ml/level1/version4" xmlns:cellml="http://www.cellml.org/cellml/1.0#">
    <listOfModels>
        <model id="model" language="urn:sedml:language:cellml.1_0" source="parabola_dae_model.cellml"/>
    </listOfModels>
    <listOfSimulations>
        <uniformTimeCourse id="simulation1" initialTime="0" numberOfSteps="1000" outputEndTime="1000" outputStartTime="0">
            <algorithm kisaoID="KISAO:0000019">
                <listOfAlgorithmParameters>
                    <algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
                    <algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
                    <algorithmParameter kisaoID="KISAO:0000481" value="true"/>
                    <algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
                    <algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
                    <algorithmParameter kisaoID="KISAO:0000480" value="0"/>
                    <algorithmParameter kisaoID="KISAO:0000415" value="500"/>
                    <algorithmParameter kisaoID="KISAO:0000467" value="0"/>
                    <algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
                    <algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
                    <algorithmParameter kisaoID="KISAO:0000479" value="0"/>
                    <algorithmParameter kisaoID="KISAO:0000000" value="KISAO:0000282">
                        <listOfAlgorithmParameters>
                            <algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
                            <algorithmParameter kisaoID="KISAO:0000480" value="0"/>
                            <algorithmParameter kisaoID="KISAO:0000486" value="200"/>
                            <algorithmParameter kisaoID="KISAO:0000479" value="0"/>
                        </listOfAlgorithmParameters>
                    </algorithmParameter>
                </listOfAlgorithmParameters>
            </algorithm>
        </uniformTimeCourse>
    </listOfSimulations>
    <listOfTasks>
        <repeatedTask id="repeatedTask" range="once" resetModel="true">
            <listOfRanges>
                <vectorRange id="once">
                    <value> 1 </value>
                </vectorRange>
            </listOfRanges>
            <listOfSubTasks>
                <subTask order="1" task="task1"/>
            </listOfSubTasks>
        </repeatedTask>
        <task id="task1" modelReference="model" simulationReference="simulation1"/>
    </listOfTasks>
    <listOfDataGenerators>
        <dataGenerator id="xDataGenerator1_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable1_1 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator1_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable1_1 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='x']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator1_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable1_2 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable1_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator1_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable1_2 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable1_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='y']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
    </listOfDataGenerators>
    <listOfOutputs>
        <plot2D id="plot1" legend="true">
            <annotation>
                <properties xmlns="http://www.opencor.ws/">
                    <backgroundColor>#ffffff</backgroundColor>
                    <fontSize>10</fontSize>
                    <foregroundColor>#000000</foregroundColor>
                    <height>1</height>
                    <gridLines>
                        <style>dot</style>
                        <width>1</width>
                        <color>#a0a0a4</color>
                    </gridLines>
                    <pointCoordinates>
                        <style>dash</style>
                        <width>1</width>
                        <color>#b0008080</color>
                        <fontColor>#ffffff</fontColor>
                    </pointCoordinates>
                    <surroundingArea>
                        <backgroundColor>#ececec</backgroundColor>
                        <foregroundColor>#000000</foregroundColor>
                    </surroundingArea>
                    <xAxis>
                        <title/>
                    </xAxis>
                    <yAxis>
                        <title/>
                    </yAxis>
                    <zoomRegion>
                        <style>solid</style>
                        <width>1</width>
                        <color>#b0800000</color>
                        <fontColor>#ffffff</fontColor>
                        <filled>true</filled>
                        <fillColor>#30ffff00</fillColor>
                    </zoomRegion>
                </properties>
            </annotation>
            <xAxis type="linear"/>
            <yAxis type="linear"/>
            <listOfCurves>
                <curve id="curve1_1" name="x" style="style1_1" type="points" xDataReference="xDataGenerator1_1" yDataReference="yDataGenerator1_1">
                    <annotation>
                        <properties xmlns="http://www.opencor.ws/">
                            <selected>true</selected>
                        </properties>
                    </annotation>
                </curve>
                <curve id="curve1_2" name="y'" style="style1_2" type="points" xDataReference="xDataGenerator1_2" yDataReference="yDataGenerator1_2">
                    <annotation>
                        <properties xmlns="http://www.opencor.ws/">
                            <selected>true</selected>
                        </properties>
                    </annotation>
                </curve>
            </listOfCurves>
        </plot2D>
    </listOfOutputs>
    <listOfStyles>
        <style id="style1_1">
            <line color="0072BD" style="solid" thickness="2"/>
            <marker fill="FFFFFF" lineColor="0072BD" size="8" style="none"/>
        </style>
        <style id="style1_2">
            <line color="D95319" style="solid" thickness="2"/>
            <marker fill="FFFFFF" lineColor="D95319" size="8" style="none"/>
        </style>
    </listOfStyles>
</sedML>