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@agramfort
agramfort / demo_dipole_fit_goodness_of_fit.ipynb
Last active June 12, 2022 09:53
Demo of dipole fit and GOF computation using MNE
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import numpy as np
import vtk
import pyvista as pv
from vtk.util import numpy_support
# from vtk.numpy_interface import dataset_adapter as dsa
data = np.zeros((50, 50, 50))
data[20:30, 20:30, 20:30] = 1
data_vtk = numpy_support.numpy_to_vtk(
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Sun Sep 20 19:45:49 2020
@author: zhanglingxi
"""
import os
import os.path as op
@agramfort
agramfort / ipynb2sg.py
Created September 26, 2020 14:03
ipynb2sg.py
from pathlib import Path
from nbconvert import PythonExporter
import textwrap
exporter = PythonExporter()
notebook = Path('docs/tutorials/decomposition/ajive_tutorial.ipynb')
def nb2py(notebook):
@agramfort
agramfort / generalized_additive_models.ipynb
Last active July 23, 2020 21:36
generalized additive models with backfitting and splines
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"""
Benchmark of MultiTaskLasso
"""
import gc
from itertools import product
from time import time
import numpy as np
import pandas as pd
from sklearn.datasets import make_regression
$ pip list
Package Version Location
--------------------------------- --------------------- -------------------------------------------------------------------------
absl-py 0.7.1
alabaster 0.7.11
alembic 1.0.11
alphacsc 0.4.dev0 /Users/alex/work/src/alphacsc
alphawaves 0.1 /Users/alex/work/src/Alpha-Waves-Dataset
appdirs 1.4.3
appnope 0.1.0
import numpy as np
import pandas as pd
from sklearn.preprocessing import OrdinalEncoder
class CountOrdinalEncoder(OrdinalEncoder):
"""Encode categorical features as an integer array
usint count information.
"""
def __init__(self, categories='auto', dtype=np.float64):
self.categories = categories
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