PlotTrackMateData.m

%From TrackMate export the tracks as xml 
xmlfile = 'Full path to the \Tracks.xml';
close all;
tracks = importTrackMateTracks(xmlfile);
%set track origin to zero cordinates
zeroTrackX = zeros(size(tracks{1,1}(:,2),1),size(tracks,1));
zeroTrackY = zeros(size(tracks{1,1}(:,2),1),size(tracks,1));
for i=1:1:size(tracks,1)
    zeroTrackX(:,i) = (tracks{i,1}(:,2) - (tracks{i,1}(1,2)));
    zeroTrackY(:,i) = tracks{i,1}(:,3) - (tracks{i,1}(1,3));
end
figure('ToolBar','none','InvertHardcopy','off','Color',[1 1 1],'Renderer', 'painters', 'Position', [10 10 600 500]);
plot(zeroTrackX,zeroTrackY,'LineWidth',1.5,'Color',[0 0 1])
ax = gca;
ax.XAxisLocation = 'origin';
ax.YAxisLocation = 'origin';
ax.Position = [0 0 1 1];
maxAxis = ceil((max(max((max(abs(zeroTrackX(:,:))))),max((max(abs(zeroTrackY(:,:))))))));
axis([maxAxis*-1,maxAxis,maxAxis*-1,maxAxis])
box(ax,'off');
set(ax,'FontName','helvetica','FontSize',12,'FontWeight','normal','LineWidth',1);