ajd98

#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# testrates.py
#
# Test two schemes for rate estimation.
#
# Written 18.04.05 by Alex DeGrave
import numpy

ajd98

#!/bin/sh

# Set the mplayer environment variables; this probably is not needed
export LD_LIBRARY_PATH=/local/usr/lib
export PATH=${PATH}:/local/usr/bin

# high motion = 5928 kbps
# moderate motion  = 4512 kbps
mencoder \
  -ovc x264 \

ajd98

    def _format_axes(self):
        axes = self.axes
        fig  = self.fig
        #nvertical = len(axes)
        #nhorizontal = len(axes[0])

        line_width=0.8
        #fig.subplots_adjust(bottom=0.2, left=0.1, right=1.05)
        minorticks = [1.0e-2*i for i in range(10)] +\
                     [1.0e-1*i for i in range(10)] +\

ajd98

#!/usr/bin/env python
# Written 7/2015 by Alex DeGrave


################################# FUNCTIONS ###################################
from __future__ import print_function
import argparse
import MDAnalysis
import numpy
import h5py

ajd98

#!/bin/bash
# Written 29 May 2015 by Alex DeGrave <ajd98@pitt.edu>
# This script generates a movie of a free energy surface, evolving in time.
# The script uses a moving block of width $BLOCK_SIZE.
# A movie is output to evolution_plots/energy_surface_evolution.avi.
# Make sure the utility mencoder is installed. 


############ USER VARIABLES ############
# Set location of westpa tools