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@ajelenak
Created June 24, 2021 23:54
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How to compute and display compression ratios of HDF5 datasets in an HDF5 file using Python
import sys
import h5py
def comp_ratio(name, obj):
if isinstance(obj, h5py.Dataset) and obj.chunks is not None:
if obj.id.get_create_plist().get_nfilters():
stor_size = obj.id.get_storage_size()
if stor_size != 0:
ratio = float(obj.nbytes) / float(stor_size)
print(f'Compression ratio for "{obj.name}": {ratio}')
if len(sys.argv) > 1:
with h5py.File(sys.argv[1], mode='r') as h5f:
print(f'Compression ratios for datasets in HDF5 file: {h5f.filename}')
h5f.visititems(comp_ratio)
else:
print('Usage: h5comprat.py <HDF5 file path>')
raise SystemExit('No HDF5 file path given')
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