Skip to content

Instantly share code, notes, and snippets.

@ajgiuliani
Created September 28, 2016 22:01
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save ajgiuliani/a1e926cf2940582df154e03c18432f46 to your computer and use it in GitHub Desktop.
Save ajgiuliani/a1e926cf2940582df154e03c18432f46 to your computer and use it in GitHub Desktop.
scalapack (homebrew/science/scalapack) on macOS 10.10.5 - Homebrew build logs
Homebrew build logs for homebrew/science/scalapack on macOS 10.10.5
Build date: 2016-09-28 23:57:43
HOMEBREW_VERSION: 1.0.3-dirty
ORIGIN: https://github.com/Homebrew/brew
HEAD: 8724e11a6b5805dffee7133526bf5457c0a5d02a
Last commit: 5 days ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 34bfe992d62caf1497c2fb33bce05bb461a577d0
Core tap last commit: 21 minutes ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: octa-core 64-bit haswell
Homebrew Ruby: 2.0.0-p481
Clang: 7.0 build 700
Git: 2.8.1 => /usr/local/bin/git
Perl: /usr/bin/perl
Python: /usr/local/bin/python => /usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/bin/python2.7
Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
Java: 1.6.0_65-b14-468
macOS: 10.10.5-x86_64
Xcode: 7.2.1
CLT: 7.2.0.0.1.1447826929
X11: 2.7.9 => /opt/X11
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
scalapack
Formula: scalapack
Tap: homebrew/science
Path: /usr/local/Homebrew/Library/Taps/homebrew/homebrew-science/scalapack.rb
2016-09-28 23:57:43 +0200
cmake
..
-DCMAKE_C_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/scalapack/2.0.2_7
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_FIND_FRAMEWORK=LAST
-DCMAKE_VERBOSE_MAKEFILE=ON
-Wno-dev
-DBUILD_SHARED_LIBS=ON
-DBLAS_LIBRARIES=-L/usr/local/opt/openblas/lib -lopenblas
-DLAPACK_LIBRARIES=-L/usr/local/opt/openblas/lib -lopenblas
-- The C compiler identification is AppleClang 7.0.2.7000181
-- The Fortran compiler identification is unknown
dyld: Library not loaded: /usr/local/lib/libmpfr.4.dylib
Referenced from: /usr/local/opt/libmpc/lib/libmpc.3.dylib
Reason: image not found
gfortran: internal compiler error: Trace/BPT trap: 5 (program cc1)
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://github.com/Homebrew/homebrew/issues> for instructions.
-- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang
-- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /usr/local/bin/gfortran
-- Check for working Fortran compiler: /usr/local/bin/gfortran -- broken
CMake Error at /usr/local/Cellar/cmake/3.6.2/share/cmake/Modules/CMakeTestFortranCompiler.cmake:54 (message):
The Fortran compiler "/usr/local/bin/gfortran" is not able to compile a
simple test program.
It fails with the following output:
Change Dir: /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/local/Homebrew/Library/Homebrew/shims/super/gmake"
"cmTC_b8d7f/fast"
/Applications/Xcode.app/Contents/Developer/usr/bin/make -f
CMakeFiles/cmTC_b8d7f.dir/build.make CMakeFiles/cmTC_b8d7f.dir/build
Building Fortran object CMakeFiles/cmTC_b8d7f.dir/testFortranCompiler.f.o
/usr/local/bin/gfortran -c
/tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/CMakeTmp/testFortranCompiler.f
-o CMakeFiles/cmTC_b8d7f.dir/testFortranCompiler.f.o
dyld: Library not loaded: /usr/local/lib/libmpfr.4.dylib
Referenced from: /usr/local/opt/libmpc/lib/libmpc.3.dylib
Reason: image not found
gfortran: internal compiler error: Trace/BPT trap: 5 (program f951)
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://github.com/Homebrew/homebrew/issues> for instructions.
make[1]: *** [CMakeFiles/cmTC_b8d7f.dir/testFortranCompiler.f.o] Error 4
make: *** [cmTC_b8d7f/fast] Error 2
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:2 (project)
-- Configuring incomplete, errors occurred!
See also "/tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/CMakeOutput.log".
See also "/tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/CMakeError.log".
HOMEBREW_VERSION: 1.0.3-dirty
ORIGIN: https://github.com/Homebrew/brew
HEAD: 8724e11a6b5805dffee7133526bf5457c0a5d02a
Last commit: 5 days ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 34bfe992d62caf1497c2fb33bce05bb461a577d0
Core tap last commit: 17 minutes ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: octa-core 64-bit haswell
Homebrew Ruby: 2.0.0-p481
GCC-4.2: build 0
Clang: 7.0 build 700
Git: 2.8.1 => /usr/local/bin/git
Perl: /usr/bin/perl
Python: /usr/bin/python
Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
Java: 1.6.0_65-b14-468
macOS: 10.10.5-x86_64
Xcode: 7.2.1
CLT: 7.2.0.0.1.1447826929
X11: 2.7.9 => /opt/X11
HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
MAKEFLAGS: -j8
CMAKE_PREFIX_PATH: /usr/local/opt/openblas:/usr/local
CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
MACOSX_DEPLOYMENT_TARGET: 10.10
PKG_CONFIG_PATH: /usr/local/opt/open-mpi/lib/pkgconfig
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.10
ACLOCAL_PATH: /usr/local/share/aclocal
PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/usr/local/opt/cmake/bin:/usr/local/opt/open-mpi/bin:/usr/local/opt/gcc/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
clang called with: CMakeCCompilerId.c
superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang CMakeCCompilerId.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -o CMakeFiles/cmTC_67551.dir/testCCompiler.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/CMakeTmp/testCCompiler.c
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -o CMakeFiles/cmTC_67551.dir/testCCompiler.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/CMakeTmp/testCCompiler.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_67551.dir/testCCompiler.c.o -o cmTC_67551
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_67551.dir/testCCompiler.c.o -o cmTC_67551 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -o CMakeFiles/cmTC_cda0c.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.6.2/share/cmake/Modules/CMakeCCompilerABI.c
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -o CMakeFiles/cmTC_cda0c.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.6.2/share/cmake/Modules/CMakeCCompilerABI.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_cda0c.dir/CMakeCCompilerABI.c.o -o cmTC_cda0c
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_cda0c.dir/CMakeCCompilerABI.c.o -o cmTC_cda0c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -std=c11 -o CMakeFiles/cmTC_eebe7.dir/feature_tests.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/feature_tests.c
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -std=c11 -o CMakeFiles/cmTC_eebe7.dir/feature_tests.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_eebe7.dir/feature_tests.c.o -o cmTC_eebe7
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_eebe7.dir/feature_tests.c.o -o cmTC_eebe7 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -std=c99 -o CMakeFiles/cmTC_be7f1.dir/feature_tests.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/feature_tests.c
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -std=c99 -o CMakeFiles/cmTC_be7f1.dir/feature_tests.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_be7f1.dir/feature_tests.c.o -o cmTC_be7f1
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_be7f1.dir/feature_tests.c.o -o cmTC_be7f1 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -std=c90 -o CMakeFiles/cmTC_1b2f7.dir/feature_tests.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/feature_tests.c
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -std=c90 -o CMakeFiles/cmTC_1b2f7.dir/feature_tests.c.o -c /tmp/scalapack-20160928-10407-yogehx/scalapack-2.0.2/build/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include
clang called with: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1b2f7.dir/feature_tests.c.o -o cmTC_1b2f7
superenv removed: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=native -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1b2f7.dir/feature_tests.c.o -o cmTC_1b2f7 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openblas/include -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment