Created
August 25, 2017 11:30
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(partial) EasyBuild log for failed build of /afs/hpc2n.umu.se/home/a/ake/Projects/git-repos/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/z/zlib/zlib-1.2.11-GCCcore-6.4.0.eb (PR #4768)
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| == 2017-08-25 13:29:53,959 easyblock.py:262 INFO This is EasyBuild 3.3.1 (framework: 3.3.1, easyblocks: 3.3.1) on host janson.hpc2n.umu.se. | |
| == 2017-08-25 13:29:53,959 easyblock.py:268 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_easyblocks-3.3.1-py2.7.egg/easybuild/easyblocks/generic/configuremake.pyo) | |
| == 2017-08-25 13:29:53,959 easyblock.py:791 INFO Build dir set to /scratch/zlib/1.2.11/GCCcore-6.4.0 | |
| == 2017-08-25 13:29:53,960 config.py:447 DEBUG software install path as specified by 'installpath' and 'subdir_software': /scratch/ake/eb-sandbox/software | |
| == 2017-08-25 13:29:53,960 easyconfig.py:1688 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762946a50> | |
| == 2017-08-25 13:29:53,960 toolchain.py:417 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}: {'COMPILER': ['GCCcore']} | |
| == 2017-08-25 13:29:53,960 toolchain.py:59 DEBUG Obtained details for 'GCCcore' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}' from cache | |
| == 2017-08-25 13:29:53,960 toolchain.py:107 DEBUG Found compilers [<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762960110>] for toolchain GCCcore ({'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}) | |
| == 2017-08-25 13:29:53,960 toolchain.py:417 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}: {'COMPILER': ['GCCcore']} | |
| == 2017-08-25 13:29:53,961 easyconfig.py:1694 DEBUG Obtained subdir Compiler/GCCcore/6.4.0/zlib/1.2.11 | |
| == 2017-08-25 13:29:53,961 easyblock.py:830 INFO Software install dir set to /scratch/ake/eb-sandbox/software/Compiler/GCCcore/6.4.0/zlib/1.2.11 | |
| == 2017-08-25 13:29:53,961 config.py:447 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /scratch/ake/eb-sandbox/modules | |
| == 2017-08-25 13:29:53,961 easyblock.py:835 INFO Module install dir set to /scratch/ake/eb-sandbox/modules/all | |
| == 2017-08-25 13:29:53,961 easyblock.py:247 INFO Init completed for application name zlib version 1.2.11 | |
| == 2017-08-25 13:29:53,961 easyblock.py:2551 INFO Obtained application instance of for zlib (easyblock: ConfigureMake) | |
| == 2017-08-25 13:29:53,961 easyblock.py:2564 DEBUG Skip set to False | |
| == 2017-08-25 13:29:53,961 build_log.py:231 INFO building and installing Compiler/GCCcore/6.4.0/zlib/1.2.11... | |
| == 2017-08-25 13:29:53,961 easyblock.py:2336 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2017-08-25 13:29:53,962 build_log.py:231 INFO fetching files... | |
| == 2017-08-25 13:29:53,962 easyblock.py:2344 INFO Starting fetch step | |
| == 2017-08-25 13:29:53,962 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762946a50> | |
| == 2017-08-25 13:29:53,962 templates.py:175 DEBUG version found in easyconfig is 1.2.11 | |
| == 2017-08-25 13:29:53,962 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-08-25 13:29:53,962 templates.py:219 DEBUG name: name, config: zlib | |
| == 2017-08-25 13:29:53,962 templates.py:219 DEBUG name: version, config: 1.2.11 | |
| == 2017-08-25 13:29:53,962 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-08-25 13:29:53,962 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-08-25 13:29:53,963 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762946a50> | |
| == 2017-08-25 13:29:53,963 templates.py:175 DEBUG version found in easyconfig is 1.2.11 | |
| == 2017-08-25 13:29:53,963 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-08-25 13:29:53,963 templates.py:219 DEBUG name: name, config: zlib | |
| == 2017-08-25 13:29:53,963 templates.py:219 DEBUG name: version, config: 1.2.11 | |
| == 2017-08-25 13:29:53,963 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-08-25 13:29:53,963 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-08-25 13:29:53,963 easyblock.py:2347 INFO Running method fetch_step part of step fetch | |
| == 2017-08-25 13:29:53,963 easyblock.py:1504 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2017-08-25 13:29:53,964 filetools.py:301 INFO Command eb found at /local/eb/software/Core/EasyBuild/3.3.1/bin/eb | |
| == 2017-08-25 13:29:53,964 tools.py:261 DEBUG Also considering installation prefix /local/eb/software/Core/EasyBuild/3.3.1... | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /afs/hpc2n.umu.se/home/a/ake/Projects/git-repos/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /scratch/eb-OxGLb9/files_pr4768/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /scratch/eb-OxGLb9/included-easyblocks/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_framework-3.3.1-py2.7.egg/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_easyblocks-3.3.1-py2.7.egg/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.3.1-py2.7.egg/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:270 DEBUG Added /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.3.1-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/plat-x86_64-linux-gnu/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-tk/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-old/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-dynload/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,965 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python2.7/dist-packages/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,966 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,966 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/PILcompat/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,966 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gtk-2.0/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,966 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/ubuntu-sso-client/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,966 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,966 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /local/eb/software/Core/EasyBuild/3.3.1/easybuild/easyconfigs | |
| == 2017-08-25 13:29:53,967 easyblock.py:626 INFO Found file zlib-1.2.11.tar.gz at /local/eb/sources/z/zlib/zlib-1.2.11.tar.gz | |
| == 2017-08-25 13:29:53,967 easyblock.py:359 DEBUG File /local/eb/sources/z/zlib/zlib-1.2.11.tar.gz found for source zlib-1.2.11.tar.gz | |
| == 2017-08-25 13:29:53,967 easyblock.py:371 INFO Added sources: [{'path': '/local/eb/sources/z/zlib/zlib-1.2.11.tar.gz', 'cmd': None, 'finalpath': '/scratch/zlib/1.2.11/GCCcore-6.4.0', 'name': 'zlib-1.2.11.tar.gz', 'checksum': 'c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1'}] | |
| == 2017-08-25 13:29:53,967 easyblock.py:1545 INFO no patches provided | |
| == 2017-08-25 13:29:53,967 filetools.py:595 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2017-08-25 13:29:53,969 easyblock.py:1555 INFO md5 checksum for /local/eb/sources/z/zlib/zlib-1.2.11.tar.gz: 1c9f62f0778697a09d36121ead88e08e | |
| == 2017-08-25 13:29:53,969 filetools.py:595 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2017-08-25 13:29:53,972 easyblock.py:1555 INFO sha256 checksum for /local/eb/sources/z/zlib/zlib-1.2.11.tar.gz: c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1 | |
| == 2017-08-25 13:29:53,973 easyconfig.py:1676 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762946a50> (force_visible: False) | |
| == 2017-08-25 13:29:53,973 easyconfig.py:1656 DEBUG No alternative software name specified to determine module name with | |
| == 2017-08-25 13:29:53,973 toolchain.py:417 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}: {'COMPILER': ['GCCcore']} | |
| == 2017-08-25 13:29:53,974 toolchain.py:59 DEBUG Obtained details for 'GCCcore' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}' from cache | |
| == 2017-08-25 13:29:53,974 toolchain.py:107 DEBUG Found compilers [<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762960110>] for toolchain GCCcore ({'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}) | |
| == 2017-08-25 13:29:53,974 toolchain.py:417 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'Core/GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}: {'COMPILER': ['GCCcore']} | |
| == 2017-08-25 13:29:53,975 utilities.py:103 DEBUG Module name Compiler/GCCcore/6.4.0/zlib/1.2.11 validated | |
| == 2017-08-25 13:29:53,975 easyconfig.py:1683 DEBUG Obtained valid full module name Compiler/GCCcore/6.4.0/zlib/1.2.11 | |
| == 2017-08-25 13:29:53,975 easyblock.py:1572 INFO Checking dirs that need to be created: ['/scratch/ake/eb-sandbox/software/Compiler/GCCcore/6.4.0/zlib/1.2.11', '/scratch/ake/eb-sandbox/modules/all/Compiler/GCCcore/6.4.0/zlib'] | |
| == 2017-08-25 13:29:53,975 filetools.py:1067 INFO Creating directory /scratch/ake/eb-sandbox/software/Compiler/GCCcore/6.4.0/zlib/1.2.11 (parents: True, set_gid: False, sticky: False) | |
| == 2017-08-25 13:29:53,976 filetools.py:1067 INFO Creating directory /scratch/ake/eb-sandbox/modules/all/Compiler/GCCcore/6.4.0/zlib (parents: True, set_gid: False, sticky: False) | |
| == 2017-08-25 13:29:53,976 easyblock.py:2336 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2017-08-25 13:29:53,976 build_log.py:231 INFO creating build dir, resetting environment... | |
| == 2017-08-25 13:29:53,976 easyblock.py:2344 INFO Starting ready step | |
| == 2017-08-25 13:29:53,977 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762946a50> | |
| == 2017-08-25 13:29:53,977 templates.py:175 DEBUG version found in easyconfig is 1.2.11 | |
| == 2017-08-25 13:29:53,977 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-08-25 13:29:53,977 templates.py:219 DEBUG name: name, config: zlib | |
| == 2017-08-25 13:29:53,977 templates.py:219 DEBUG name: version, config: 1.2.11 | |
| == 2017-08-25 13:29:53,977 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-08-25 13:29:53,978 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-08-25 13:29:53,978 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fe762946a50> | |
| == 2017-08-25 13:29:53,978 templates.py:175 DEBUG version found in easyconfig is 1.2.11 | |
| == 2017-08-25 13:29:53,978 templates.py:219 DEBUG name: github_account, config: None | |
| == 2017-08-25 13:29:53,978 templates.py:219 DEBUG name: name, config: zlib | |
| == 2017-08-25 13:29:53,978 templates.py:219 DEBUG name: version, config: 1.2.11 | |
| == 2017-08-25 13:29:53,978 templates.py:219 DEBUG name: versionsuffix, config: | |
| == 2017-08-25 13:29:53,978 templates.py:219 DEBUG name: versionprefix, config: | |
| == 2017-08-25 13:29:53,978 easyblock.py:2347 INFO Running method check_readiness_step part of step ready | |
| == 2017-08-25 13:29:53,978 easyblock.py:1459 DEBUG Desired parallelism specified via 'parallel' build option: None | |
| == 2017-08-25 13:29:53,979 affinity.py:211 DEBUG sched_getaffinity for pid 41333 returned cpuset 0-3 | |
| == 2017-08-25 13:29:53,979 run.py:80 DEBUG Using cached value for command 'ulimit -u': ('63527\n', 0) | |
| == 2017-08-25 13:29:53,979 easyblock.py:1462 INFO Setting parallelism: 4 | |
| == 2017-08-25 13:29:53,979 modules.py:640 DEBUG Current MODULEPATH: /scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core | |
| == 2017-08-25 13:29:53,979 modules.py:647 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2017-08-25 13:29:53,980 modules.py:647 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2017-08-25 13:29:53,980 modules.py:651 DEBUG Running module command '/local/eb/software/lmod/lmod/libexec/lmod python --terse list' from /scratch/ake/eb-sandbox | |
| == 2017-08-25 13:29:54,014 modules.py:657 DEBUG Output of module command '/local/eb/software/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "eCIsIi9sb2NhbC9lYi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL2xvY2FsL2ViL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9sb2NhbC9lYi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9MaW51eDovbG9jYWwvZWIvc29mdHdhcmUvbW9kdWxlZmlsZXMvQ29yZTovbG9jYWwvZWIvc29mdHdhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: EasyBuild/3.3.1 | |
| == 2017-08-25 13:29:54,014 modules.py:1108 DEBUG Output found in stdout, seems like '/local/eb/software/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2017-08-25 13:29:54,015 modules.py:694 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2017-08-25 13:29:54,015 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-08-25 13:29:54,015 modules.py:694 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2017-08-25 13:29:54,015 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-08-25 13:29:54,015 easyblock.py:1467 WARNING Loaded modules detected: ['EasyBuild/3.3.1'] | |
| == 2017-08-25 13:29:54,015 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Core/binutils/2.28', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.28', 'external_module': False, 'versionsuffix': '', 'version': '2.28', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}] | |
| == 2017-08-25 13:29:54,016 easyconfig.py:617 DEBUG Dependencies AFTER filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Core/binutils/2.28', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.28', 'external_module': False, 'versionsuffix': '', 'version': '2.28', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}] | |
| == 2017-08-25 13:29:54,016 toolchain.py:375 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'Core/binutils/2.28', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.28', 'external_module': False, 'versionsuffix': '', 'version': '2.28', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}] | |
| == 2017-08-25 13:29:54,016 toolchain.py:385 DEBUG add_dependencies: MODULEPATH: /scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core | |
| == 2017-08-25 13:29:54,016 modules.py:640 DEBUG Current MODULEPATH: /scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core | |
| == 2017-08-25 13:29:54,016 modules.py:647 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2017-08-25 13:29:54,016 modules.py:647 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2017-08-25 13:29:54,016 modules.py:651 DEBUG Running module command '/local/eb/software/lmod/lmod/libexec/lmod python --terse --show-hidden avail Core/binutils/2.28' from /scratch/ake/eb-sandbox | |
| == 2017-08-25 13:29:54,058 modules.py:657 DEBUG Output of module command '/local/eb/software/lmod/lmod/libexec/lmod python --terse --show-hidden avail Core/binutils/2.28': stdout: os.environ["MODULEPATH"] = "/scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "eCIsIi9sb2NhbC9lYi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL2xvY2FsL2ViL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9sb2NhbC9lYi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9MaW51eDovbG9jYWwvZWIvc29mdHdhcmUvbW9kdWxlZmlsZXMvQ29yZTovbG9jYWwvZWIvc29mdHdhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| ; stderr: | |
| == 2017-08-25 13:29:54,059 modules.py:1108 DEBUG Output found in stdout, seems like '/local/eb/software/lmod/lmod/libexec/lmod python --terse --show-hidden avail Core/binutils/2.28' ran fine | |
| == 2017-08-25 13:29:54,059 modules.py:694 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2017-08-25 13:29:54,059 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-08-25 13:29:54,059 modules.py:694 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2017-08-25 13:29:54,059 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-08-25 13:29:54,059 modules.py:429 DEBUG 'module available Core/binutils/2.28' gave 0 answers: [] | |
| == 2017-08-25 13:29:54,060 modules.py:541 DEBUG Found cached result for 'module show Core/binutils/2.28' with key '('MODULEPATH=/scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core', 'lmod', 'Core/binutils/2.28')': os.environ["MODULEPATH"] = "/scratch/ake/eb-sandbox/modules/all:/local/eb/modules/all/Core:/local/eb/software/modulefiles/Linux:/local/eb/software/modulefiles/Core:/local/eb/software/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "eCIsIi9sb2NhbC9lYi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL2xvY2FsL2ViL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9sb2NhbC9lYi9zb2Z0d2FyZS9tb2R1bGVmaWxlcy9MaW51eDovbG9jYWwvZWIvc29mdHdhcmUvbW9kdWxlZmlsZXMvQ29yZTovbG9jYWwvZWIvc29mdHdhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| Failed to find the following module(s): "Core/binutils/2.28" in your MODULEPATH | |
| Try: | |
| "module spider Core/binutils/2.28" | |
| to see if the module(s) are available across all compilers and MPI implementations. | |
| == 2017-08-25 13:29:54,060 build_log.py:156 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for one or more dependencies: Core/binutils/2.28 (at easybuild/tools/toolchain/toolchain.py:400 in add_dependencies) | |
| == 2017-08-25 13:29:54,061 easyblock.py:2577 WARNING build failed (first 300 chars): Missing modules for one or more dependencies: Core/binutils/2.28 | |
| == 2017-08-25 13:29:54,061 easyblock.py:277 INFO Closing log for application name zlib version 1.2.11 |
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