EasyBuild test report for easybuilders/easybuild-easyblocks PR(s) #2837, #2838

easybuild_test_report_2837_2838_easybuilders_preasybuild-easyblocks_20231214-UTC-08-12-58.md

Test report for easyblock PR(s) easybuilders/easybuild-easyblocks#2837, easybuilders/easybuild-easyblocks#2838

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

• SUCCESS Amber-22.0-foss-2021b-AmberTools-22.3.eb

Time info

• start: Thu, 14 Sep 2023 07:05:38 +0000 (UTC)
• end: Thu, 14 Sep 2023 08:12:58 +0000 (UTC)

EasyBuild info

• easybuild-framework version: 4.8.2.dev0-r0546463808ea59a0f2ef0ecf5f76f4d02c7eea7e
• easybuild-easyblocks version: 4.8.2.dev0-r7c1e7175ad8429573be46892602a426ca28471f9
• command line:

eb Amber-22.0-foss-2021b-AmberTools-22.3.eb --include-easyblocks-from-pr 2837,2838 --rebuild -u

• full configuration (includes defaults):

--accept-eula-for=''
--accept-eula=''
--allow-loaded-modules='EasyBuild,singularity'
--buildpath='/dev/shm/eb-ake'
--check-ebroot-env-vars='error'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--configfiles='/etc/easybuild.d/easybuild.cfg,/home/a/ake/.config/easybuild/config.cfg'
--container-type='singularity'
--containerpath='/home/a/ake/easybuild-amd64_ubuntu2004_bdw/containers'
--cuda-compute-capabilities='3.5,3.7,7.0,8.0,8.6'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-missing-modules
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-silence-hook-trigger
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--download-timeout='10'
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME,PROJECT'
--experimental
--extended-dry-run-ignore-errors
--filter-deps=''
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--from-pr=''
--generate-devel-module
--git-working-dirs-path='/afs/hpc2n.umu.se/home/a/ake/Projects/git-repos/easybuild'
--github-user='akesandgren'
--hooks='/hpc2n/eb/custom/easyhooks/hpc2n_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr='2837,2838'
--include-easyblocks='/hpc2n/eb/custom/easyblocks/*.py,/hpc2n/eb/custom/easyblocks/generic/*.py'
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/home/a/ake/easybuild-amd64_ubuntu2004_bdw'
--job-backend='Slurm'
--job-cores='14'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='4'
--job-output-dir='/home/a/ake'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--minimal-toolchains
--module-depends-on
--module-extensions
--module-naming-scheme='HierarchicalMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/home/a/ake/easybuild-amd64_ubuntu2004_bdw/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/home/a/ake/easybuild-amd64_ubuntu2004_bdw'
--rebuild
--recursive-module-unload
--repository='FileRepository'
--repositorypath='/home/a/ake/easybuild-amd64_ubuntu2004_bdw/ebfiles_repo'
--robot-paths='/afs/hpc2n.umu.se/home/a/ake/Projects/git-repos/easybuild/easybuild_common/custom/easyconfigs:/hpc2n/eb/custom/easyconfigs:'
--show-progress-bar
--silence-deprecation-warnings=''
--sourcepath='/home/a/ake/easybuild-src/sources:/pfs/data/software/open_sources:/pfs/data/software/hidden_sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--subdir-user-modules=''
--suffix-modules-path='all'
--tmpdir='/scratch/eb-ake-tmp'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--verify-easyconfig-filenames
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

• core count: 28
• cpu arch: x86_64
• cpu arch name: UNKNOWN
• cpu model: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz
• cpu speed: 3500.0
• cpu vendor: Intel
• gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none:hsa; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-linux-gnu; Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.4.0-1ubuntu120.04.1' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-Av3uEd/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu; Thread model: posix; gcc version 9.4.0 (Ubuntu 9.4.0-1ubuntu120.04.1) ;
• glibc version: 2.31
• hostname: b-an02.hpc2n.umu.se
• os name: Ubuntu
• os type: Linux
• os version: 20.04
• platform name: x86_64-unknown-linux
• python version: 3.8.10 (default, Mar 13 2023, 10:26:41) ; [GCC 9.4.0]
• system gcc path: /usr/bin/gcc
• system python path: None
• total memory: 256915

List of loaded modules

• snicenvironment
• systemdefault
• EasyBuild-develop
• eb_user/develop
• SoftInst/develop

Environment

APPTAINER_APPNAME = 
APPTAINER_BIND = /hpc2n,/cvmfs/ebsw.hpc2n.umu.se,/home/a/ake/easybuild,/run/munge,/etc/slurm,/lap/slurm,/usr/local/bin
APPTAINER_COMMAND = run
APPTAINER_CONTAINER = /home/a/ake/easybuild-dev/singularity/focal-eb-base-autobuild.sif
APPTAINER_ENVIRONMENT = /.singularity.d/env/91-environment.sh
APPTAINER_NAME = focal-eb-base-autobuild.sif
BASH_ENV = /hpc2n/eb/software/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module%% = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
COLUMNS = 133
CSH_ENV = /hpc2n/eb/software/lmod/lmod/init/csh
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/2008/bus
DEBEMAIL = ake@hpc2n.umu.se
DEBFULLNAME = Åke Sandgren
DEB_FULLNAME = Åke Sandgren
DISPLAY = localhost:13.0
EASYBUILD_EXPERIMENTAL = 1
EASYBUILD_FILTER_DEPS = 
EASYBUILD_INCLUDE_EASYBLOCKS = /hpc2n/eb/custom/easyblocks/*.py,/hpc2n/eb/custom/easyblocks/generic/*.py
EASYBUILD_JOB_BACKEND = Slurm
EASYBUILD_JOB_CORES = 14
EASYBUILD_JOB_MAX_WALLTIME = 4
EASYBUILD_PREFIX = /home/a/ake/easybuild-amd64_ubuntu2004_bdw
EASYBUILD_SOURCEPATH = /home/a/ake/easybuild-src/sources:/pfs/data/software/open_sources:/pfs/data/software/hidden_sources
EASYBUILD_SUBDIR_USER_MODULES = 
EBROOTEASYBUILD = /home/a/ake/Projects/easybuild-dev
EBVERSIONEASYBUILD = develop
EB_INSTALLPYTHON = /usr/bin/python3
EB_SCRIPT_PATH = /home/a/ake/Projects/easybuild-dev/easybuild-framework/eb
EDITOR = /usr/bin/vim
FANCYLOGGER_IGNORE_MPI4PY = 1
FPATH = /hpc2n/eb/software/lmod/lmod/init/ksh_funcs
HOME = /home/a/ake
KRB5CCNAME = FILE:/tmp/tkt5_ake
LANG = en_US.UTF-8
LC_ADDRESS = en_US.UTF-8
LC_IDENTIFICATION = en_US.UTF-8
LC_MEASUREMENT = en_US.UTF-8
LC_MONETARY = en_US.UTF-8
LC_NAME = en_US.UTF-8
LC_NUMERIC = en_US.UTF-8
LC_PAPER = en_US.UTF-8
LC_TELEPHONE = en_US.UTF-8
LC_TIME = en_US.UTF-8
LD_LIBRARY_PATH = /.singularity.d/libs
LESSCLOSE = /usr/local/bin/lesspipe '%s' '%s'
LESSOPEN = | /usr/local/bin/lesspipe '%s'
LINES = 53
LMOD_CMD = /hpc2n/eb/software/lmod/lmod/libexec/lmod
LMOD_DIR = /hpc2n/eb/software/lmod/lmod/libexec
LMOD_PKG = /hpc2n/eb/software/lmod/lmod
LMOD_ROOT = /hpc2n/eb/software/lmod
LMOD_SETTARG_FULL_SUPPORT = yes
LMOD_SHORT_TIME = 86400
LMOD_SYSTEM_DEFAULT_MODULES = snicenvironment:systemdefault
LMOD_VERSION = 8.6.2
LOADEDMODULES = snicenvironment:systemdefault:EasyBuild-develop:eb_user/develop:SoftInst/develop
LOGNAME = ake
MANPATH = :/opt/puppetlabs/puppet/share/man:/opt/thinlinc/share/man
MODULEPATH = /hpc2n/eb/modules/all:/home/a/ake/Projects/easybuild-dev/modules:/home/a/ake/easybuild/modules/all/Core:/home/a/ake/easybuild-dev/modules/all/Core:/hpc2n/eb/modules/all/Core:/hpc2n/eb/software/lmod/lmod/modulefiles/Core
MODULESHOME = /hpc2n/eb/software/lmod/lmod
MOTD_SHOWN = pam
OLDPWD = /home/a/ake
OMP_NUM_THREADS = 1
ORIGKRB5CCNAME = FILE:/tmp/tkt5_ake
PAGER = less
PATH = /home/a/ake/easybuild-dev/software/eb_user/develop/bin:/home/a/ake/Projects/easybuild-dev/easybuild-framework:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/lap/slurm/bin
PRINCIPAL = ake
PRINTER = SetThePRINTERVariable@your.print.server
PROJECT = /home/a/ake/easybuild-amd64_ubuntu2004_bdw
PROMPT_COMMAND = PS1="Apptainer> "; unset PROMPT_COMMAND
PWD = /home/a/ake
PYTHONOPTIMIZE = 1
PYTHONPATH = /home/a/ake/Projects/easybuild-dev/easybuild-easyconfigs:/home/a/ake/Projects/easybuild-dev/easybuild-easyblocks:/home/a/ake/Projects/easybuild-dev/easybuild-framework:/home/a/ake/Projects/easybuild-dev/vsc-install/lib:/home/a/ake/Projects/easybuild-dev/vsc-base/lib
RANDFILE = /dev/urandom
SHELL = /bin/bash
SHLVL = 4
SINGULARITY_BIND = /hpc2n,/cvmfs/ebsw.hpc2n.umu.se,/home/a/ake/easybuild,/run/munge,/etc/slurm,/lap/slurm,/usr/local/bin
SINGULARITY_CONTAINER = /home/a/ake/easybuild-dev/singularity/focal-eb-base-autobuild.sif
SINGULARITY_ENVIRONMENT = /.singularity.d/env/91-environment.sh
SINGULARITY_NAME = focal-eb-base-autobuild.sif
SNIC_BACKUP = /home/a/ake
SNIC_NOBACKUP = /pfs/nobackup/home/a/ake
SNIC_RESOURCE = kebnekaise
SNIC_SITE = hpc2n
SNIC_TMP = /scratch
SOFTINST_ARCH = amd64_ubuntu2004_bdw
SQUEUE_FORMAT = %.18i %.9P %.8j %.8u %.2t %.10M %.10L %.6D %R
SSH_AUTH_SOCK = /tmp/ssh-fz7NNnz547/agent.94863
SSH_CLIENT = 130.239.46.31 40438 22
SSH_CONNECTION = 130.239.46.31 40438 130.239.243.101 22
SSH_TTY = /dev/pts/7
STY = 94902.easybuild
TERM = screen.xterm-256color
TERMCAP = SC|screen.xterm-256color|VT 100/ANSI X3.64 virtual terminal:DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:li#53:co#133:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:ti=\E[?1049h:te=\E[?1049l:us=\E[4m:ue=\E[24m:so=\E[3m:se=\E[23m:mb=\E[5m:md=\E[1m:mh=\E[2m:mr=\E[7m:me=\E[m:ms:Co#8:pa#64:AF=\E[3%dm:AB=\E[4%dm:op=\E[39;49m:AX:vb=\Eg:G0:as=\E(0:ae=\E(B:ac=\140\140aaffggjjkkllmmnnooppqqrrssttuuvvwwxxyyzz{{||}}~~..--++,,hhII00:po=\E[5i:pf=\E[4i:Km=\E[M:k0=\E[10~:k1=\EOP:k2=\EOQ:k3=\EOR:k4=\EOS:k5=\E[15~:k6=\E[17~:k7=\E[18~:k8=\E[19~:k9=\E[20~:k;=\E[21~:F1=\E[23~:F2=\E[24~:kB=\E[Z:kh=\E[1~:@1=\E[1~:kH=\E[4~:@7=\E[4~:kN=\E[6~:kP=\E[5~:kI=\E[2~:kD=\E[3~:ku=\EOA:kd=\EOB:kr=\EOC:kl=\EOD:km:
TMPDIR = /scratch
USER = ake
USER_PATH = /home/a/ake/easybuild-dev/software/eb_user/develop/bin:/home/a/ake/Projects/easybuild-dev/easybuild-framework:/home/a/ake/Public/bin:/usr/local/bin:/usr/local/sbin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/opt/puppetlabs/bin:/opt/thinlinc/bin:/usr/heimdal/sbin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin
WINDOW = 4
WINDOWNAME = [ ake@b-an02.hpc2n.umu.se ]:/home/a/ake
XDG_DATA_DIRS = /usr/local/share:/usr/share
XDG_RUNTIME_DIR = /run/user/2008
XDG_SESSION_CLASS = user
XDG_SESSION_ID = 606
XDG_SESSION_TYPE = tty
_ = /usr/bin/python3
_LMFILES_ = /hpc2n/eb/modules/all/Core/snicenvironment.lua:/hpc2n/eb/modules/all/Core/systemdefault.lua:/home/a/ake/Projects/easybuild-dev/modules/EasyBuild-develop:/home/a/ake/easybuild-dev/modules/all/Core/eb_user/develop.lua:/home/a/ake/easybuild-dev/modules/all/Core/SoftInst/develop.lua
_LMOD_INITIALIZED = 1
_ModuleTable001_ = 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
_ModuleTable002_ = 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__LMOD_REF_COUNT_LOADEDMODULES = snicenvironment:1;systemdefault:1;EasyBuild-develop:1;eb_user/develop:1;SoftInst/develop:1
__LMOD_REF_COUNT_MODULEPATH = /hpc2n/eb/modules/all:1;/home/a/ake/Projects/easybuild-dev/modules:1;/home/a/ake/easybuild/modules/all/Core:1;/home/a/ake/easybuild-dev/modules/all/Core:1;/hpc2n/eb/modules/all/Core:1;/hpc2n/eb/software/lmod/lmod/modulefiles/Core:1
__LMOD_REF_COUNT_PATH = /home/a/ake/easybuild-dev/software/eb_user/develop/bin:1;/home/a/ake/Projects/easybuild-dev/easybuild-framework:1;/usr/local/sbin:2;/usr/local/bin:2;/usr/sbin:2;/usr/bin:1;/sbin:2;/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /home/a/ake/Projects/easybuild-dev/easybuild-easyconfigs:1;/home/a/ake/Projects/easybuild-dev/easybuild-easyblocks:1;/home/a/ake/Projects/easybuild-dev/easybuild-framework:1;/home/a/ake/Projects/easybuild-dev/vsc-install/lib:1;/home/a/ake/Projects/easybuild-dev/vsc-base/lib:1
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__LMOD_SET_FPATH = 1