Seqant ec2 setup script; sets up raid0

ec2-amazon-ami-setup-raid0

#! /usr/bin/env bash

sudo yum update -y
sudo yum install git -y
sudo gem install rmate
sudo yum install sysstat -y

touch ~/.inputrc
(echo ""; echo '"\e[A": history-search-backward') >> ~/.inputrc
(echo ""; echo '"\e[B": history-search-forward') >> ~/.inputrc


# Assuming your devices are xvdb and xvdc
sudo mdadm --create --verbose /dev/md0 --level=0 --name=ANNOTATOR_RAID --raid-devices=2 /dev/xvdb /dev/xvdc
sudo mkfs.ext4 -L ANNOTATOR_RAID /dev/md0
sudo mkdir -p /mnt/annotator_databases
sudo mount LABEL=ANNOTATOR_RAID /mnt/annotator_databases/

sudo cp /etc/fstab /etc/fstab.orig

sudo bash;
sudo ( echo '' ; echo 'LABEL=ANNOTATOR_RAID  /mnt/annotator_databases/  ext4  defaults,noatime,nodiratime,noexec  0  2') >> /etc/fstab

#Test that it all worked
sudo mount -a

sudo mkdir /efs
sudo mount -t nfs4 -o nfsvers=4.1 $(curl -s http://169.254.169.254/latest/meta-data/placement/availability-zone).fs-4da96f04.efs.us-east-1.amazonaws.com:/ /efs



# If want to set up your git account
#ssh-keygen -t rsa -b 4096 -C "your_email@example.com"

## Copy git key to bash_profile (uncomment first)
#if [ -z "$SSH_AUTH_SOCK" ] ; then
#  eval `ssh-agent -s`
#  ssh-add ~/.ssh/id_rsa
#fi

## Add to your git account
# cat ~/.ssh/id_rsa.pub 
# copy that, and add to the git panel

# Then change permissions
# chmod 400 /home/ec2-user/.ssh/id_rsa*

cd ~

git clone git://github.com/akotlar/seq-lmdb.git

cd seq-lmdb

./install